Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17e01
         (298 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles ...    24   1.4  
AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.            24   1.4  
U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.             22   5.6  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          22   5.6  
AJ973471-1|CAJ01518.1|  122|Anopheles gambiae hypothetical prote...    22   5.6  
AJ697731-1|CAG26924.1|  122|Anopheles gambiae putative chemosens...    22   5.6  
AJ697730-1|CAG26923.1|  122|Anopheles gambiae putative chemosens...    22   5.6  
AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced ...    21   9.8  

>M93689-2|AAA29367.1|  975|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 975

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 5   SSPGLWFYTLEFYSLKRVQXLKNK*HHFLNLVLKN 109
           SS   +   L  + L ++  + N  +H+L+LVL N
Sbjct: 188 SSSSCFLDVLNLHELYQLNGVHNHSNHYLDLVLSN 222


>AY753542-1|AAV28545.1| 3361|Anopheles gambiae SGS5 protein.
          Length = 3361

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 64   FEKQMTSFLKFSFEKQMTSSLDCVLHVEFYS 156
            ++KQ    L+FS  K+   +LD V+H  + S
Sbjct: 1941 YDKQ--GILRFSLHKEHNETLDRVIHFTYVS 1969



 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 187  LKFSFEKQMTSSLDCVLH 240
            L+FS  K+   +LD V+H
Sbjct: 1947 LRFSLHKEHNETLDRVIH 1964


>U43499-1|AAA93302.1|  278|Anopheles gambiae a-emp protein.
          Length = 278

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 64  FEKQMTSFLKFSFEKQMT 117
           +EK +   L  SFEK++T
Sbjct: 194 YEKDLCRLLPLSFEKEVT 211


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -3

Query: 101 KLNLRNDVICFSKXELALASRILACKT 21
           K+ L   V+C  +   ++ SR +AC T
Sbjct: 297 KVRLAARVVCVDQHRPSIPSRWIACDT 323


>AJ973471-1|CAJ01518.1|  122|Anopheles gambiae hypothetical protein
           protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 103 EKQMTSSLDCVLHVEFYS*SEFKQM 177
           EKQ TSS   + H+E     E+K++
Sbjct: 77  EKQRTSSRKVIAHLEERKPQEWKKL 101


>AJ697731-1|CAG26924.1|  122|Anopheles gambiae putative chemosensory
           protein CSP2 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 103 EKQMTSSLDCVLHVEFYS*SEFKQM 177
           EKQ TSS   + H+E     E+K++
Sbjct: 77  EKQRTSSRKVIAHLEERKPQEWKKL 101


>AJ697730-1|CAG26923.1|  122|Anopheles gambiae putative chemosensory
           protein CSP1 protein.
          Length = 122

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 103 EKQMTSSLDCVLHVEFYS*SEFKQM 177
           EKQ TSS   + H+E     E+K++
Sbjct: 77  EKQRTSSRKVIAHLEERKPQEWKKL 101


>AF080564-1|AAC31944.1|  372|Anopheles gambiae Sex combs reduced
           homeotic protein protein.
          Length = 372

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = +1

Query: 4   IIPWIVVLHARILLAKASSXFEKQMTSFLKF 96
           I PW+  +H       A+   ++Q TS+ ++
Sbjct: 260 IYPWMKRVHIGQSTVNANGETKRQRTSYTRY 290


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,955
Number of Sequences: 2352
Number of extensions: 3447
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 563,979
effective HSP length: 55
effective length of database: 434,619
effective search space used: 18688617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)