Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17e01
(298 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81550-5|CAB04479.1| 881|Caenorhabditis elegans Hypothetical pr... 28 1.4
Z83220-1|CAB05700.2| 440|Caenorhabditis elegans Hypothetical pr... 26 4.2
Z78420-3|CAC42299.1| 85|Caenorhabditis elegans Hypothetical pr... 26 4.2
AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical ... 26 4.2
Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr... 25 7.4
Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical pr... 25 7.4
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein... 25 7.4
X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein. 25 9.7
AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and gl... 25 9.7
>Z81550-5|CAB04479.1| 881|Caenorhabditis elegans Hypothetical
protein F55F3.4 protein.
Length = 881
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +1
Query: 25 LHARILLAKASSXFEKQMTSFLKFSFEK-QMTSSLDCVLHVEFYS*SEFKQMTSFLKFSF 201
+HA I+ + FE F+KFS K +++ + VL+ + K+ + K +F
Sbjct: 187 IHAAIVSFSKTICFEYHGVGFIKFSMSKCDVSTKITVVLNSDTVFGLSHKEKSILKKINF 246
Query: 202 EK 207
EK
Sbjct: 247 EK 248
>Z83220-1|CAB05700.2| 440|Caenorhabditis elegans Hypothetical
protein C34B7.1 protein.
Length = 440
Score = 26.2 bits (55), Expect = 4.2
Identities = 18/78 (23%), Positives = 33/78 (42%)
Frame = -3
Query: 248 NSTCKTQSRDDVICFSKLNLRNDVICLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICF 69
N+ CKTQ++ + + L V C + C+T + + C + L N+ +
Sbjct: 103 NNDCKTQTQPTLPPVNPTPLLGSVTCYECSTNDGTDCQTNTCEGAYCLYERRLFNNQMYL 162
Query: 68 SKXELALASRILACKTTI 15
K L + L +TT+
Sbjct: 163 RKSCLIEPTIQLDDETTV 180
>Z78420-3|CAC42299.1| 85|Caenorhabditis elegans Hypothetical
protein F45H11.5 protein.
Length = 85
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -3
Query: 200 KLNLRNDVICLNSLYE*NSTCKTQSRDDVIC 108
KL + N ++CL+ + NS C++ ++D C
Sbjct: 30 KLEMLNYMVCLHEKKQQNSECRSTAKDYFEC 60
>AF067609-5|AAC17534.1| 644|Caenorhabditis elegans Hypothetical
protein C23H5.7 protein.
Length = 644
Score = 26.2 bits (55), Expect = 4.2
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -3
Query: 290 DVICFSKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVICL 168
D+ S+L L+E T+ F KL + ND+ CL
Sbjct: 96 DIFVQSRLTYLHEGEEVKNTKKLRKNYFFQKLKVANDIFCL 136
>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 275 SKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVI 174
+K LYE +STC + D V + +L + +D I
Sbjct: 1385 TKSKELYERSSTCIERLEDCVEMYQRLKMESDEI 1418
>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
F15D3.1a protein.
Length = 3674
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 275 SKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVI 174
+K LYE +STC + D V + +L + +D I
Sbjct: 1385 TKSKELYERSSTCIERLEDCVEMYQRLKMESDEI 1418
>Z67737-3|CAA91538.2| 399|Caenorhabditis elegans Hypothetical
protein T01H10.3 protein.
Length = 399
Score = 25.4 bits (53), Expect = 7.4
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +2
Query: 8 SPGLWFYTLEFYSLKRVQ 61
+PG W YTL +SLK V+
Sbjct: 69 APGRWNYTLLLFSLKLVE 86
>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
protein.
Length = 3674
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = -3
Query: 275 SKLNSLYE*NSTCKTQSRDDVICFSKLNLRNDVI 174
+K LYE +STC + D V + +L + +D I
Sbjct: 1385 TKSKELYERSSTCIERLEDCVEMYQRLKMESDEI 1418
>X77495-1|CAA54629.1| 402|Caenorhabditis elegans lag-2 protein.
Length = 402
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 200 KLNLRNDVICLNSLYE*NSTCKTQSRDDVIC 108
K + ND IC++S+ + +T S + +IC
Sbjct: 174 KCSCENDGICVSSMIHPSQPNQTSSNEQLIC 204
>AC024205-1|AAF36047.1| 402|Caenorhabditis elegans Lin-12 and glp-1
phenotype protein2 protein.
Length = 402
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 200 KLNLRNDVICLNSLYE*NSTCKTQSRDDVIC 108
K + ND IC++S+ + +T S + +IC
Sbjct: 174 KCSCENDGICVSSMIHPSQPNQTSSNEQLIC 204
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,461,085
Number of Sequences: 27780
Number of extensions: 86341
Number of successful extensions: 122
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 99
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 302276744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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