Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d24
         (141 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm...    25   1.4  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    23   4.2  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    23   4.2  
SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces pom...    23   7.3  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         23   7.3  
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p...    23   7.3  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    23   7.3  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    22   9.6  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    22   9.6  
SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces...    22   9.6  

>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
           intermediate chain Dic1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 544

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +1

Query: 73  NTPPPSGVLTCTTINITKTW 132
           N PP + ++TC+T  +   W
Sbjct: 301 NNPPSNNIVTCSTDGLVHIW 320


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +1

Query: 64  ELFNTPPPSGVLTCTTINITKTW 132
           +L  TP P+ + +   INI++ W
Sbjct: 323 QLVRTPSPASLSSSELINISRDW 345


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 76  TPPPSGVLTCTTINITKT 129
           TP P+G  + TT+N T+T
Sbjct: 727 TPKPNGTNSVTTLNRTQT 744


>SPAC6B12.14c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +2

Query: 20  FSXQFCIKKTYKIMPNYSIHPHH 88
           F  Q+C++K      + S+H HH
Sbjct: 73  FISQYCLEKLASSDNDSSVHNHH 95


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -1

Query: 126 FCNIYCRTRKYARWWG 79
           F   YC+T K  RW G
Sbjct: 283 FTGNYCQTEKGVRWLG 298


>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1098

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 69  IQYTPTIGRTYVYDN 113
           ++  PTI +TYVY N
Sbjct: 558 LEKLPTITKTYVYSN 572


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
           synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 129 SFCNIYCRTRKYARWWG 79
           +F N+Y  + +Y R+WG
Sbjct: 222 NFTNVYNTSCEYPRFWG 238


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 38  IKKTYKIMPNYSIHPHHRAYLR 103
           +KK  K+ P YS+ P  +  LR
Sbjct: 127 VKKHDKLYPGYSLRPVFQVRLR 148


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 47  TYKIMPNYSIHPHHRAYLR 103
           T +I P+ SI+P H  Y R
Sbjct: 505 TLQINPHSSINPEHLNYFR 523


>SPAC14C4.05c |mug61||Sad1 interacting factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 844

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -3

Query: 43  FNTKLXRKSLKYLF 2
           +N+KL RK L YLF
Sbjct: 649 YNSKLTRKVLYYLF 662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 598,035
Number of Sequences: 5004
Number of extensions: 7541
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 27
effective length of database: 2,227,370
effective search space used: 42320030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)