Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d24
         (141 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z74474-3|CAE17872.1|  147|Caenorhabditis elegans Hypothetical pr...    25   5.6  
Z77135-2|CAB00879.1|  769|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AC024801-3|AAK68511.3|  852|Caenorhabditis elegans Hypothetical
           protein Y50D7A.4 protein.
          Length = 852

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 63  RIIQYTPTIGRTYVYDNKYYKNLG 134
           R IQ+TPT+   Y+   + YK+ G
Sbjct: 408 RAIQHTPTVVENYMLKARIYKHAG 431


>Z74474-3|CAE17872.1|  147|Caenorhabditis elegans Hypothetical
           protein K10C8.4 protein.
          Length = 147

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +2

Query: 35  CIKKTYKIMPNYSIHPHHRAYL 100
           C+   +KI PN  IH H  A L
Sbjct: 28  CLSSLHKIFPNIHIHIHSPAQL 49


>Z77135-2|CAB00879.1|  769|Caenorhabditis elegans Hypothetical
           protein T16A9.4 protein.
          Length = 769

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 55  NNAELFNTPPPSGVLTCTTINI 120
           N   +FN+PPP     C T+++
Sbjct: 412 NQTGMFNSPPPDRWEDCVTLSV 433


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,330,372
Number of Sequences: 27780
Number of extensions: 42414
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 12,740,198
effective HSP length: 27
effective length of database: 11,990,138
effective search space used: 227812622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)