Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d24
(141 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase p... 25 0.062
AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin ... 22 0.77
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 21 1.8
DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse tr... 20 3.1
DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse tr... 20 3.1
Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1 p... 19 4.1
AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase p... 19 4.1
AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase p... 19 4.1
AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein. 19 5.4
AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein ... 19 5.4
EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein. 19 7.2
AY739658-1|AAU85297.1| 664|Apis mellifera hyperpolarization-act... 19 7.2
AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein. 19 7.2
AY280848-1|AAQ16312.1| 632|Apis mellifera hyperpolarization-act... 19 7.2
AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase pro... 18 9.5
>EF540769-1|ABQ14707.1| 620|Apis mellifera adenosine deaminase
protein.
Length = 620
Score = 25.4 bits (53), Expect = 0.062
Identities = 10/37 (27%), Positives = 19/37 (51%)
Frame = +2
Query: 23 SXQFCIKKTYKIMPNYSIHPHHRAYLRVRQ*ILQKLG 133
S FCI +++PN+ H + + + Q + K+G
Sbjct: 220 SSSFCIPLPVRVLPNFPSSGHWQDQMSLPQMLADKIG 256
>AF004168-1|AAC13417.1| 377|Apis mellifera blue-sensitive opsin
protein.
Length = 377
Score = 21.8 bits (44), Expect = 0.77
Identities = 8/18 (44%), Positives = 12/18 (66%), Gaps = 2/18 (11%)
Frame = +2
Query: 50 YKIMPNYS--IHPHHRAY 97
+ + P YS +HPH RA+
Sbjct: 32 WNVPPEYSDLVHPHWRAF 49
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 84 TIGRTYVYDNKYYKNLGC 137
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 84 TIGRTYVYDNKYYKNLGC 137
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 20.6 bits (41), Expect = 1.8
Identities = 7/18 (38%), Positives = 10/18 (55%)
Frame = +3
Query: 84 TIGRTYVYDNKYYKNLGC 137
++ Y Y+N YK L C
Sbjct: 84 SLSNNYNYNNNNYKKLYC 101
>DQ494419-1|ABF55370.1| 127|Apis mellifera telomerase reverse
transcriptase protein.
Length = 127
Score = 19.8 bits (39), Expect = 3.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 70 IIRHYFIGFFN 38
I+R YFI FF+
Sbjct: 117 ILRQYFITFFS 127
>DQ494418-1|ABF55369.1| 110|Apis mellifera telomerase reverse
transcriptase protein.
Length = 110
Score = 19.8 bits (39), Expect = 3.1
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 70 IIRHYFIGFFN 38
I+R YFI FF+
Sbjct: 100 ILRQYFITFFS 110
>Y13429-1|CAA73841.1| 402|Apis mellifera dopamine receptor, D1
protein.
Length = 402
Score = 19.4 bits (38), Expect = 4.1
Identities = 4/13 (30%), Positives = 9/13 (69%)
Frame = -1
Query: 126 FCNIYCRTRKYAR 88
+C +YC +K+ +
Sbjct: 212 YCRLYCYAQKHVK 224
>AY568009-1|AAS73299.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +3
Query: 66 IIQYTPTIGRTYVYDNKY 119
+I+Y PT + + +KY
Sbjct: 80 VIRYFPTQALNFAFKDKY 97
>AY332626-1|AAQ24500.1| 300|Apis mellifera ADP/ATP translocase
protein.
Length = 300
Score = 19.4 bits (38), Expect = 4.1
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +3
Query: 66 IIQYTPTIGRTYVYDNKY 119
+I+Y PT + + +KY
Sbjct: 80 VIRYFPTQALNFAFKDKY 97
>AY703685-1|AAU12681.1| 200|Apis mellifera abdominal-A protein.
Length = 200
Score = 19.0 bits (37), Expect = 5.4
Identities = 6/19 (31%), Positives = 12/19 (63%)
Frame = +1
Query: 55 NNAELFNTPPPSGVLTCTT 111
++ +LF++ P + CTT
Sbjct: 14 HHQQLFSSANPGTIQACTT 32
>AB083209-1|BAC54133.1| 87|Apis mellifera hypothetical protein
protein.
Length = 87
Score = 19.0 bits (37), Expect = 5.4
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = -2
Query: 86 GGGVLNNSALFYRFF*Y 36
G G + + FYRFF Y
Sbjct: 71 GYGFVPPNQAFYRFFYY 87
>EF625896-1|ABR45903.1| 683|Apis mellifera hexamerin protein.
Length = 683
Score = 18.6 bits (36), Expect = 7.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +2
Query: 44 KTYKIMPNYSIHPH 85
K K+ P Y + PH
Sbjct: 153 KLMKLPPMYEVMPH 166
>AY739658-1|AAU85297.1| 664|Apis mellifera
hyperpolarization-activated ion channelvariant L
protein.
Length = 664
Score = 18.6 bits (36), Expect = 7.2
Identities = 5/17 (29%), Positives = 8/17 (47%)
Frame = -1
Query: 120 NIYCRTRKYARWWGCIE 70
N+ C W GC++
Sbjct: 281 NLICMMLLIGHWSGCLQ 297
>AY601637-1|AAT11850.1| 683|Apis mellifera hexamerin 70b protein.
Length = 683
Score = 18.6 bits (36), Expect = 7.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Frame = +2
Query: 44 KTYKIMPNYSIHPH 85
K K+ P Y + PH
Sbjct: 153 KLMKLPPMYEVMPH 166
>AY280848-1|AAQ16312.1| 632|Apis mellifera
hyperpolarization-activated ion channel protein.
Length = 632
Score = 18.6 bits (36), Expect = 7.2
Identities = 5/17 (29%), Positives = 8/17 (47%)
Frame = -1
Query: 120 NIYCRTRKYARWWGCIE 70
N+ C W GC++
Sbjct: 249 NLICMMLLIGHWSGCLQ 265
>AB253416-1|BAE86927.1| 580|Apis mellifera alpha-glucosidase
protein.
Length = 580
Score = 18.2 bits (35), Expect = 9.5
Identities = 6/16 (37%), Positives = 9/16 (56%)
Frame = +2
Query: 38 IKKTYKIMPNYSIHPH 85
+K +PN+S H H
Sbjct: 114 LKVILDFVPNHSSHEH 129
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,067
Number of Sequences: 438
Number of extensions: 724
Number of successful extensions: 17
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 27
effective length of database: 134,517
effective search space used: 2555823
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)
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