Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d20
(644 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans... 214 1e-56
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr... 173 2e-44
SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-tr... 165 6e-42
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i... 165 6e-42
SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans... 116 3e-27
SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-tran... 112 4e-26
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid... 105 7e-24
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-... 73 4e-14
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 55 1e-08
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 5.3
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa... 26 5.3
>SPBC1709.04c |cyp3||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp3 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 173
Score = 214 bits (522), Expect = 1e-56
Identities = 95/157 (60%), Positives = 121/157 (77%), Gaps = 1/157 (0%)
Frame = -3
Query: 477 PVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRR-DGVPLGYKGATFHRVI 301
PVVF DI + +GR+ LF+ +VPKT+ENFR+FCTGE + P+GYK +TFHR+I
Sbjct: 5 PVVFMDIAIDGRLLGRIKIRLFSSIVPKTAENFRQFCTGETLGVNQKPIGYKNSTFHRII 64
Query: 300 KDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITC 121
+ FMIQGGDFV+GDGTG +I+ TF DENF LKHD PGLLSMAN+GKD+NGCQFFIT
Sbjct: 65 QGFMIQGGDFVSGDGTGSATIFNSRTFPDENFTLKHDRPGLLSMANAGKDSNGCQFFITT 124
Query: 120 AKCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
C+FLD KHVVFG VI+G ++++IE+ P G N++P
Sbjct: 125 VPCDFLDGKHVVFGEVIEGYDIVKEIESTPVGANSRP 161
>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 162
Score = 173 bits (421), Expect = 2e-44
Identities = 83/145 (57%), Positives = 103/145 (71%)
Frame = -3
Query: 468 FFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFM 289
FFD+ +GR++F+LF DVVPKT+ NFR CTGE GY G+TFHRVI FM
Sbjct: 5 FFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKG-----YGYAGSTFHRVIPQFM 59
Query: 288 IQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCN 109
+QGGDF G+GTG SIYG F DENF LKH+ PGLLSMAN+G +TNG QFFIT
Sbjct: 60 LQGGDFTRGNGTGGKSIYG-EKFPDENFALKHNKPGLLSMANAGPNTNGSQFFITTVVTP 118
Query: 108 FLDNKHVVFGRVIDGLLVMRKIENV 34
+LD KHVVFG V +G+ V++K+E++
Sbjct: 119 WLDGKHVVFGEVTEGMDVVKKVESL 143
>SPAC1B3.03c |wis2|cyp5|cyclophilin family peptidyl-prolyl cis-trans
isomerase Wis2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 165 bits (400), Expect = 6e-42
Identities = 85/153 (55%), Positives = 103/153 (67%)
Frame = -3
Query: 468 FFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFM 289
+F I++ + FELF +VVPKT +NF C G + +DG L YKG+ FHRVIK+FM
Sbjct: 6 YFKISIDGKIQPTIYFELFDNVVPKTVKNFASLCNG-FEKDGRCLTYKGSRFHRVIKNFM 64
Query: 288 IQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCN 109
+QGGDF G+GTG SIYG F DENF LKHD P LLSMAN+G +TNG QFFIT
Sbjct: 65 LQGGDFTRGNGTGGESIYG-EKFEDENFELKHDKPFLLSMANAGPNTNGSQFFITTVPTP 123
Query: 108 FLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
LD KHVVFG+VI G +R IEN+ T N+ P
Sbjct: 124 HLDGKHVVFGKVIQGKSTVRTIENLET-KNDDP 155
>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 201
Score = 165 bits (400), Expect = 6e-42
Identities = 83/154 (53%), Positives = 99/154 (64%)
Frame = -3
Query: 471 VFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDF 292
V+FD+ G +GR+ LF VPKT+ENFR TGE GY+G+ FHRVI +F
Sbjct: 29 VYFDLQQGDEFLGRVTIGLFGKTVPKTAENFRALATGEKG-----FGYEGSIFHRVIPNF 83
Query: 291 MIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKC 112
MIQGGD GDGTG SIYG S F DENF L H PGLLSMAN+G D+NG QFFIT K
Sbjct: 84 MIQGGDITKGDGTGGKSIYG-SRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKT 142
Query: 111 NFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
+LD HVVFG V+ G +++KI T +KP
Sbjct: 143 PWLDGHHVVFGEVLSGYDIVKKISKAETDNRDKP 176
>SPAC57A10.03 |cyp1||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 116 bits (279), Expect = 3e-27
Identities = 64/146 (43%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T +G+++ EL+ + PKT +NF Y Y G FHRVI DF+IQGGD
Sbjct: 8 TSLGKILIELYTEHAPKTCQNFYTLAKEGY--------YDGVIFHRVIPDFVIQGGD-PT 58
Query: 264 GDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHV 88
G G G SIYG F DE + L H G+LSMAN+G +TN QFFIT A +LD KH
Sbjct: 59 GTGRGGTSIYGDK-FDDEIHSDLHHTGAGILSMANAGPNTNSSQFFITLAPTPWLDGKHT 117
Query: 87 VFGRVIDGLLVMRKIENVPTGPNNKP 10
+FGRV+ GL V +++ + T +++P
Sbjct: 118 IFGRVVSGLSVCKRMGLIRTDSSDRP 143
>SPAC21E11.05c |cyp8||cyclophilin family peptidyl-prolyl cis-trans
isomerase Cyp8|Schizosaccharomyces pombe|chr 1|||Manual
Length = 516
Score = 112 bits (270), Expect = 4e-26
Identities = 66/146 (45%), Positives = 79/146 (54%), Gaps = 1/146 (0%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T G + EL D P NF + Y Y+ FHR I FMIQGGD +
Sbjct: 282 TNHGEINIELHTDYAPHAVYNFVQLAKQGY--------YRNTIFHRNIARFMIQGGD-PS 332
Query: 264 GDGTGVMSIYGGSTFADENFG-LKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHV 88
G G G SI+G F DE LKHD G++SMAN GK+TNG QFFI LDNKH
Sbjct: 333 GTGRGGQSIWG-KPFKDEFCNPLKHDDRGIISMANRGKNTNGSQFFILYGPAKHLDNKHT 391
Query: 87 VFGRVIDGLLVMRKIENVPTGPNNKP 10
+FGRV+ GL V+ +E VPT N+ P
Sbjct: 392 IFGRVVGGLNVLDALEKVPTNSNDHP 417
>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
peptidyl-prolyl cis-trans isomerase
Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 610
Score = 105 bits (251), Expect = 7e-24
Identities = 65/162 (40%), Positives = 86/162 (53%), Gaps = 1/162 (0%)
Frame = -3
Query: 492 RNPNNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATF 313
R N ++ + T G + +L+ + PK +NF Y Y F
Sbjct: 445 RQENGNILLGKAAIIHTTQGDISIKLYPEEAPKAVQNFTTHAENGY--------YDNTIF 496
Query: 312 HRVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQ 136
HR+IK+FMIQGGD + GDGTG SI+ F DE + LKHD P +SMANSG +TNG Q
Sbjct: 497 HRIIKNFMIQGGDPL-GDGTGGESIWK-KDFEDEISPNLKHDRPFTVSMANSGPNTNGSQ 554
Query: 135 FFITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
FFIT +LD KH +F R GL V+ +IE T ++P
Sbjct: 555 FFITTDLTPWLDGKHTIFARAYAGLDVVHRIEQGETDKYDRP 596
>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 72.9 bits (171), Expect = 4e-14
Identities = 51/157 (32%), Positives = 74/157 (47%), Gaps = 1/157 (0%)
Frame = -3
Query: 477 PVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIK 298
P+ + + TT G + EL+ VPK NF + C Y Y G HRV+
Sbjct: 9 PLATGTVILKTTR-GDIQIELWCKEVPKACRNFIQLCLEGY--------YDGTIVHRVVP 59
Query: 297 DFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCA 118
+F+IQGGD G G G SIYG + + L+ GL+ MA + + N QFFIT
Sbjct: 60 EFLIQGGD-PTGTGMGGESIYGEPFAVETHPRLRFIRRGLVGMACTENEGNNSQFFITLG 118
Query: 117 KCNFLDNKHVVFGRVI-DGLLVMRKIENVPTGPNNKP 10
+ K +FGRV+ D + + +I + N +P
Sbjct: 119 PTPEWNGKQTLFGRVVGDTIYNVVRISELELDANQRP 155
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 54.8 bits (126), Expect = 1e-08
Identities = 44/159 (27%), Positives = 73/159 (45%), Gaps = 14/159 (8%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T +G ++ +LF PKT ENF + C +Y Y F+ + ++ Q GD +
Sbjct: 7 TTVGDLVIDLFVKEAPKTCENFLKLCKLKY--------YNFCPFYNIQHNYTCQTGDPLG 58
Query: 264 GDGTGVMSIYG----GSTF--ADENFGLKHDSPGLLSMAN---SGKDTN----GCQFFIT 124
G G ++ G+ F A+ N L H+ GL+SM+ S +D G QF IT
Sbjct: 59 PTGDGGRCVWNVLNKGTRFFKAEFNPSLVHNKMGLVSMSTATISSRDDKLLVCGSQFIIT 118
Query: 123 CA-KCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
+ LD ++ ++G+V +G + KI + +P
Sbjct: 119 LSDNLEGLDERYPIYGQVAEGFDTLLKINDAICDEEGQP 157
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 5.3
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Frame = +2
Query: 371 NSLKFSLV-FGTTSANNSNIIRPISVVPTVMS-KNTT 475
NS K S++ G +N+SNII+P + T++S +N T
Sbjct: 479 NSYKNSVLSIGNNHSNHSNIIKPNTYKNTILSNENNT 515
>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 5.3
Identities = 6/15 (40%), Positives = 9/15 (60%)
Frame = +1
Query: 10 GFIIWSCWYIFYFPH 54
G+++W CW Y H
Sbjct: 279 GYVLWLCWCTMYLTH 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,796
Number of Sequences: 5004
Number of extensions: 56912
Number of successful extensions: 167
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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