Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d20
(644 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0359 + 22508900-22509439 192 2e-49
02_01_0160 + 1116160-1116678 190 8e-49
06_03_1340 + 29455210-29455290,29455493-29455571,29455767-294558... 180 7e-46
02_01_0782 + 5827364-5827441,5827733-5827787,5828761-5828849,582... 179 2e-45
06_03_1341 + 29458085-29458198,29458448-29458526,29458923-294589... 173 1e-43
05_01_0022 + 154399-154428,154528-154716,155469-155619,155724-15... 171 3e-43
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 169 2e-42
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 167 5e-42
10_01_0309 + 3417602-3418147 163 1e-40
01_02_0015 + 10191793-10191957,10192085-10192229,10192331-101924... 148 4e-36
06_01_0798 - 5944815-5944888,5945084-5945243,5945319-5945356,594... 134 6e-32
08_02_1563 + 27886202-27886446,27886533-27886618,27886942-278870... 126 1e-29
09_06_0098 + 20850535-20850612,20851258-20851333,20851474-208515... 121 6e-28
06_01_0214 + 1634171-1634173,1634263-1634742 118 3e-27
08_02_1578 - 27992848-27992893,27993431-27993515,27994107-279942... 117 7e-27
03_02_0048 - 5265595-5265783,5265882-5265992,5266259-5266547,526... 110 8e-25
01_05_0478 - 22587881-22588021,22588126-22588266,22588436-225886... 95 3e-20
06_03_1076 + 27409107-27409204,27409731-27409835,27409915-274100... 83 1e-16
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 79 3e-15
07_03_0359 - 17201711-17201803,17202185-17202332,17202437-172025... 61 8e-10
02_01_0086 + 613113-613532 52 5e-07
06_03_1075 + 27399279-27399376,27399449-27399555,27400791-274008... 50 2e-06
08_02_0053 + 11721658-11721689,11721960-11722710 47 1e-05
11_06_0322 + 22358505-22358642,22358690-22358791,22359444-223595... 45 6e-05
10_01_0310 + 3425099-3425218 40 0.002
01_01_0077 - 585670-585787,585921-586687 39 0.003
06_01_0893 - 6834350-6834464,6835042-6835218,6835301-6835350,683... 29 3.2
01_01_0126 - 1159370-1159657,1161665-1161811,1162832-1162891,116... 29 3.2
06_01_0112 - 876213-876857,877245-877622,877707-877813,878271-87... 29 4.2
04_04_0483 - 25554531-25554605,25554681-25555644,25555722-255558... 28 7.3
01_04_0018 + 15128174-15128316,15128445-15128544,15129573-151297... 28 7.3
03_05_0115 - 20973942-20974292,20974571-20974689,20974771-20974894 27 9.7
>09_06_0359 + 22508900-22509439
Length = 179
Score = 192 bits (468), Expect = 2e-49
Identities = 91/154 (59%), Positives = 110/154 (71%), Gaps = 2/154 (1%)
Frame = -3
Query: 480 NPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGE--YRRDGVPLGYKGATFHR 307
NP VFFDI +G GR++ ELFAD VPKT+ENFR CTGE G PL YKG+ FHR
Sbjct: 5 NPKVFFDILIGKARAGRVVMELFADTVPKTAENFRCLCTGEKGLGASGKPLHYKGSAFHR 64
Query: 306 VIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFI 127
+I +FM QGGDF G+GTG SIYG FADENF L+H PG+LSMAN+G +TNG QFFI
Sbjct: 65 IIPNFMCQGGDFTRGNGTGGESIYG-DRFADENFKLRHTGPGVLSMANAGPNTNGSQFFI 123
Query: 126 TCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPTG 25
+ +LD KHVVFG+V+DG V+ K+E V +G
Sbjct: 124 CTTRTTWLDGKHVVFGKVVDGYTVVEKMEQVGSG 157
>02_01_0160 + 1116160-1116678
Length = 172
Score = 190 bits (463), Expect = 8e-49
Identities = 94/162 (58%), Positives = 116/162 (71%), Gaps = 4/162 (2%)
Frame = -3
Query: 483 NNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGE--YRRDGVPLGYKGATFH 310
+N VFFD+TVG GR++ EL+A VP+T+ENFR CTGE + G PL YKG+TFH
Sbjct: 2 SNTRVFFDMTVGGAPAGRIVMELYAKDVPRTAENFRALCTGEKGVGKSGKPLHYKGSTFH 61
Query: 309 RVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFF 130
RVI +FM QGGDF G+GTG SIYG FADE F KHDSPG+LSMAN+G +TNG QFF
Sbjct: 62 RVIPEFMCQGGDFTRGNGTGGESIYG-EKFADEVFKFKHDSPGILSMANAGPNTNGSQFF 120
Query: 129 ITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPT--GPNNKP 10
I C++LD KHVVFGRV++G+ V++ IE V + G KP
Sbjct: 121 ICTVPCSWLDGKHVVFGRVVEGMDVVKAIEKVGSRGGSTAKP 162
>06_03_1340 +
29455210-29455290,29455493-29455571,29455767-29455814,
29455908-29455931,29456433-29456615,29456730-29456805,
29456937-29457072
Length = 208
Score = 180 bits (439), Expect = 7e-46
Identities = 88/146 (60%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Frame = -3
Query: 471 VFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGE--YRRDGVPLGYKGATFHRVIK 298
VFFDIT+ GR++ LF + VPKT+ENFR CTGE + G PL YKG FHR+I
Sbjct: 42 VFFDITINGKPAGRIVMGLFGNTVPKTAENFRAICTGEKGLGKSGKPLSYKGTPFHRIIP 101
Query: 297 DFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCA 118
FMIQGGD V+G+GTG SIYGG F DENF + H +PGLLSMAN KDTNG QFFIT
Sbjct: 102 GFMIQGGDTVSGNGTGCDSIYGGM-FPDENFKINHSAPGLLSMANYAKDTNGSQFFITTV 160
Query: 117 KCNFLDNKHVVFGRVIDGLLVMRKIE 40
K LD KHVVFG+V+ G+ V+ KIE
Sbjct: 161 KLTRLDGKHVVFGKVLSGMDVVYKIE 186
>02_01_0782 +
5827364-5827441,5827733-5827787,5828761-5828849,
5829167-5829191,5829645-5829683,5830316-5830433,
5830857-5831023,5831155-5831518,5831589-5831701,
5832185-5832310,5832436-5833339,5833694-5834036
Length = 806
Score = 179 bits (436), Expect = 2e-45
Identities = 90/152 (59%), Positives = 109/152 (71%), Gaps = 3/152 (1%)
Frame = -3
Query: 480 NPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEY---RRDGVPLGYKGATFH 310
NP+VF D+++G RM+FELFADV P+T+ENFR CTGE + PL YKG+ FH
Sbjct: 6 NPIVFMDVSIGDEPDERMVFELFADVAPRTAENFRALCTGEMGIGQTSKKPLYYKGSLFH 65
Query: 309 RVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFF 130
RVIK FM QGGDF NGDG+G SIYGG TF DENF L+HD GLLSMAN+G +TNG QFF
Sbjct: 66 RVIKGFMAQGGDFSNGDGSGGESIYGG-TFEDENFVLRHDERGLLSMANAGPNTNGSQFF 124
Query: 129 ITCAKCNFLDNKHVVFGRVIDGLLVMRKIENV 34
IT + LD K VFG++I G V+++IE V
Sbjct: 125 ITFKHNSRLDRKSTVFGKLILGNDVLKRIEYV 156
>06_03_1341 +
29458085-29458198,29458448-29458526,29458923-29458970,
29459064-29459087,29459554-29459736,29459845-29459920,
29460020-29460158
Length = 220
Score = 173 bits (420), Expect = 1e-43
Identities = 83/146 (56%), Positives = 103/146 (70%), Gaps = 2/146 (1%)
Frame = -3
Query: 471 VFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYR--RDGVPLGYKGATFHRVIK 298
V+FD+ + GR++ LF VPKT+ENFR CTGE + G L +KG+ FHR+I
Sbjct: 53 VYFDVEIDGKPAGRVVMGLFGKTVPKTAENFRALCTGEKGTGKSGKALHFKGSAFHRIIP 112
Query: 297 DFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCA 118
FMIQGGDF GDG G SIYG + FADENF +KH PGLLSMAN+G+DTNG QFFIT
Sbjct: 113 SFMIQGGDFTLGDGRGGESIYG-TKFADENFKIKHTGPGLLSMANAGRDTNGSQFFITTV 171
Query: 117 KCNFLDNKHVVFGRVIDGLLVMRKIE 40
++LD KHVVFG+V+ G+ V+ KIE
Sbjct: 172 TTSWLDGKHVVFGKVLSGMDVVYKIE 197
>05_01_0022 +
154399-154428,154528-154716,155469-155619,155724-155812,
156391-156445,156533-156618,156705-156857
Length = 250
Score = 171 bits (417), Expect = 3e-43
Identities = 87/169 (51%), Positives = 117/169 (69%), Gaps = 3/169 (1%)
Frame = -3
Query: 507 IQSQLRNPNNPVVFFDITVGTT---EIGRMIFELFADVVPKTSENFREFCTGEYRRDGVP 337
+QS++ N V+FDI++G +GR++ L+ D VP+T+ENFR CTGE
Sbjct: 77 LQSKITNK----VYFDISIGNPVGKNVGRVVIGLYGDDVPQTAENFRALCTGEKG----- 127
Query: 336 LGYKGATFHRVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSG 157
GYKG++FHRVIKDFMIQGGDF G+GTG SIYG TF DENF L H PG++SMAN+G
Sbjct: 128 FGYKGSSFHRVIKDFMIQGGDFDKGNGTGGKSIYG-RTFKDENFKLVHTGPGVVSMANAG 186
Query: 156 KDTNGCQFFITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
+TNG QFFI K +LD +HVVFG+VI+G+ +++ IE+ T ++P
Sbjct: 187 PNTNGSQFFICTVKTPWLDGRHVVFGQVIEGMDIVKMIESQETDRGDRP 235
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 169 bits (410), Expect = 2e-42
Identities = 75/110 (68%), Positives = 88/110 (80%)
Frame = -3
Query: 489 NPNNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFH 310
NP NPVVFFD+T+G+ GR+ ELFAD+VPKT+ENFR+FCTGE+R+ G+P GYKG FH
Sbjct: 33 NPKNPVVFFDVTIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFH 92
Query: 309 RVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANS 160
RVIKDFMIQGGD++ GDGTG SIY G+ F DENF KH PGLLSM S
Sbjct: 93 RVIKDFMIQGGDYMKGDGTGCTSIY-GTKFDDENFIAKHTGPGLLSMVRS 141
Score = 80.2 bits (189), Expect = 1e-15
Identities = 35/44 (79%), Positives = 40/44 (90%), Gaps = 1/44 (2%)
Frame = -3
Query: 138 QFFITCAKCNFLDNKHVVFGRVI-DGLLVMRKIENVPTGPNNKP 10
QFFITCAKC +LDNKHVVFGRV+ DG+L +RKIENV TGPNN+P
Sbjct: 200 QFFITCAKCEWLDNKHVVFGRVLGDGMLAVRKIENVATGPNNRP 243
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 167 bits (407), Expect = 5e-42
Identities = 87/174 (50%), Positives = 111/174 (63%), Gaps = 17/174 (9%)
Frame = -3
Query: 480 NPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEY---RRDGVPLGYK----- 325
NP + D+++G GR++ EL+A V P+T+ENFR CTGE GVPL YK
Sbjct: 32 NPRCYLDVSIGGDMEGRIVVELYASVAPRTAENFRALCTGEKGVSAATGVPLHYKISLKA 91
Query: 324 ---------GATFHRVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLS 172
G+ HR++K FM+QGGD GDGTG SIYG F DENF LKH+ G+LS
Sbjct: 92 ASVCTRWTKGSCIHRIVKGFMVQGGDITAGDGTGGESIYG-LNFEDENFVLKHERKGMLS 150
Query: 171 MANSGKDTNGCQFFITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
MAN+G DTNG QFFIT + LD KHVVFGRVI G+ V+R +E+V G +++P
Sbjct: 151 MANAGPDTNGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSMEHVSVGESDRP 204
>10_01_0309 + 3417602-3418147
Length = 181
Score = 163 bits (396), Expect = 1e-40
Identities = 84/164 (51%), Positives = 105/164 (64%), Gaps = 6/164 (3%)
Frame = -3
Query: 483 NNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYR-RDGVP-LGYKGATFH 310
+NP VF DI +G +GR++ EL AD VP T+ENFR CTGE R G L YKG+ FH
Sbjct: 9 SNPRVFLDIAIGGEWVGRVVIELLADKVPDTAENFRRLCTGERAGRSGKSRLHYKGSAFH 68
Query: 309 RVIKDFMIQGGDFVNGDGTGVMSIYGGST--FADENFGLKHDSPGLLSMANSGKDTNGCQ 136
RV+ FM QGGD G+GTG S G+ F DE F +KHD PG++SMAN+G +TNG Q
Sbjct: 69 RVVPGFMCQGGDITAGNGTGGESALDGAARHFPDEGFAVKHDGPGVVSMANAGPNTNGSQ 128
Query: 135 FFITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPT--GPNNKP 10
FFIT K +LD +HV FGRV+ G+ +R I+ T G KP
Sbjct: 129 FFITVDKAPWLDGRHVAFGRVVAGMGAVRAIDRTGTWSGKTVKP 172
>01_02_0015 +
10191793-10191957,10192085-10192229,10192331-10192419,
10193009-10193063,10193607-10193692,10194006-10194065
Length = 199
Score = 148 bits (358), Expect = 4e-36
Identities = 75/141 (53%), Positives = 90/141 (63%)
Frame = -3
Query: 498 QLRNPNNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGA 319
+L+ N FFD+ VG GR++ LF +VVPKT +NFR CTG+ GYKG
Sbjct: 59 ELQAKVNSKCFFDVEVGGEPAGRIVIGLFGEVVPKTVDNFRALCTGDKG-----YGYKGC 113
Query: 318 TFHRVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGC 139
+FHR+IKDFMIQGGDF N +GTG SIY G F DENF LKH PG+LSMAN+G DTNG
Sbjct: 114 SFHRIIKDFMIQGGDFQNNNGTGGRSIY-GECFDDENFTLKHTGPGVLSMANAGPDTNGS 172
Query: 138 QFFITCAKCNFLDNKHVVFGR 76
QFFI K + + V R
Sbjct: 173 QFFICTVKFSHFKELNQVLNR 193
>06_01_0798 -
5944815-5944888,5945084-5945243,5945319-5945356,
5945438-5945513,5946114-5946218,5947486-5947986,
5948638-5948710,5949550-5949593,5949938-5950174
Length = 435
Score = 134 bits (324), Expect = 6e-32
Identities = 64/106 (60%), Positives = 77/106 (72%)
Frame = -3
Query: 327 KGATFHRVIKDFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDT 148
+G+ FHRVIK FM+QGGD GDGTG SIYG F DENF LKH+ G+LSMANSG +T
Sbjct: 118 QGSCFHRVIKGFMVQGGDITAGDGTGGESIYG-LKFEDENFVLKHERKGMLSMANSGPNT 176
Query: 147 NGCQFFITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
NG QFFIT + LD KHVVFGRVI G+ V+R +E+ P G ++P
Sbjct: 177 NGSQFFITTTRTPHLDGKHVVFGRVIKGMGVVRSVEHAPVGEADRP 222
Score = 54.4 bits (125), Expect = 7e-08
Identities = 22/41 (53%), Positives = 30/41 (73%)
Frame = -3
Query: 480 NPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGE 358
NP F D+++G GR++ EL+A VVP+T+ENFR CTGE
Sbjct: 25 NPRCFMDVSIGGEIEGRIVIELYASVVPRTAENFRALCTGE 65
>08_02_1563 +
27886202-27886446,27886533-27886618,27886942-27887030,
27887193-27887432,27887527-27887648,27888103-27888178,
27888276-27888383,27888465-27888641,27888959-27889176,
27889313-27889445,27889584-27889807,27890052-27890205,
27890297-27890380
Length = 651
Score = 126 bits (305), Expect = 1e-29
Identities = 74/152 (48%), Positives = 91/152 (59%), Gaps = 1/152 (0%)
Frame = -3
Query: 462 DITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQ 283
D V T +G + L+ + PKT ENF C Y Y FHRVIK FMIQ
Sbjct: 496 DNLVMHTSMGDIHLRLYPEECPKTVENFTTHCRNGY--------YDNLIFHRVIKGFMIQ 547
Query: 282 GGDFVNGDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNF 106
GD + GDGTG SI+G F DE + L+HD P LSMAN+G +TNG QFFIT +
Sbjct: 548 TGDPL-GDGTGGQSIWGRE-FEDEFHKSLRHDRPFTLSMANAGPNTNGSQFFITTVATPW 605
Query: 105 LDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
LDNKH VFGRV+ G+ V+++IE V T N+KP
Sbjct: 606 LDNKHTVFGRVVKGMDVVQQIEKVKTDKNDKP 637
>09_06_0098 +
20850535-20850612,20851258-20851333,20851474-20851521,
20851758-20851781,20851875-20851994,20852235-20852310,
20852385-20852547
Length = 194
Score = 121 bits (291), Expect = 6e-28
Identities = 69/156 (44%), Positives = 87/156 (55%), Gaps = 2/156 (1%)
Frame = -3
Query: 471 VFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGE--YRRDGVPLGYKGATFHRVIK 298
V+ D+ + IGR++ L+ DVVPKT NFR CTGE G L YKG+ FHR+I
Sbjct: 40 VYLDVEIDGQHIGRIVIGLYGDVVPKTVANFRALCTGEEGIGHKGKSLHYKGSRFHRIIP 99
Query: 297 DFMIQGGDFVNGDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCA 118
FMIQGGD V GDG G +++MANSG D+NG QF+IT
Sbjct: 100 GFMIQGGDIVRGDGKG----------------------SVIAMANSGPDSNGSQFYITTI 137
Query: 117 KCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
K ++LD +HVVFGRVI G+ + IE N KP
Sbjct: 138 KTSWLDGEHVVFGRVIQGMDYVYAIEGGAGTYNGKP 173
>06_01_0214 + 1634171-1634173,1634263-1634742
Length = 160
Score = 118 bits (285), Expect = 3e-27
Identities = 68/146 (46%), Positives = 86/146 (58%), Gaps = 1/146 (0%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T +G + E+F D P+T+ENF C Y Y G FHR IK FMIQGGD
Sbjct: 7 TNLGDIKCEVFCDQAPRTAENFLALCASGY--------YDGTIFHRNIKGFMIQGGD-PT 57
Query: 264 GDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHV 88
G G G SI+G FADE LKH++ G++SMANSG +TNG QFFIT AK L+ +
Sbjct: 58 GTGKGGTSIWG-KKFADEFRESLKHNARGVMSMANSGPNTNGSQFFITYAKQPHLNGHYT 116
Query: 87 VFGRVIDGLLVMRKIENVPTGPNNKP 10
VF +VI G V+ +E TGP ++P
Sbjct: 117 VFAKVIHGFEVLDLMEKAQTGPGDRP 142
>08_02_1578 -
27992848-27992893,27993431-27993515,27994107-27994240,
27994579-27994640,27994736-27994831,27994952-27995023
Length = 164
Score = 117 bits (282), Expect = 7e-27
Identities = 64/146 (43%), Positives = 84/146 (57%), Gaps = 1/146 (0%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T +G E++ PKT NF E Y Y FHR+IKDF++QGGD
Sbjct: 16 TSMGAFTIEMYYKHAPKTCRNFLELSRRGY--------YDNVIFHRIIKDFIVQGGD-PT 66
Query: 264 GDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHV 88
G G G SIYG F DE LKH G+LSMAN+G +TNG QFFIT A C LD KH
Sbjct: 67 GTGRGGESIYGAK-FEDEIRPELKHTGAGILSMANAGPNTNGSQFFITLAPCQSLDGKHT 125
Query: 87 VFGRVIDGLLVMRKIENVPTGPNNKP 10
+FGRV G+ +++++ +V T +++P
Sbjct: 126 IFGRVSKGMEIVKRLGSVQTDKSDRP 151
>03_02_0048 -
5265595-5265783,5265882-5265992,5266259-5266547,
5266647-5266903,5266995-5267356,5267447-5267522,
5267618-5267707,5267800-5267891,5267995-5268098,
5268191-5268253,5268609-5268736
Length = 586
Score = 110 bits (265), Expect = 8e-25
Identities = 65/146 (44%), Positives = 80/146 (54%), Gaps = 1/146 (0%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T G + EL D+ P+T ENF C Y Y G FHR IK+FMIQGGD
Sbjct: 351 TTHGDLNLELHCDITPRTCENFLTHCENGY--------YNGLIFHRSIKNFMIQGGD-PT 401
Query: 264 GDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHV 88
G G+G SI+G F DE N L H G++SMANSG TNG QFFI L+ KH
Sbjct: 402 GTGSGGESIWG-KPFKDELNSKLIHSGRGVVSMANSGPHTNGSQFFILYKSAPHLNFKHT 460
Query: 87 VFGRVIDGLLVMRKIENVPTGPNNKP 10
VFG V+ GL + +E VP +++P
Sbjct: 461 VFGMVVGGLTTLSAMEKVPVDDDDRP 486
>01_05_0478 -
22587881-22588021,22588126-22588266,22588436-22588643,
22589199-22589238,22589425-22589647,22590826-22590970,
22591053-22591156,22591298-22591396,22591506-22591684,
22591948-22592167
Length = 499
Score = 95.5 bits (227), Expect = 3e-20
Identities = 57/148 (38%), Positives = 85/148 (57%), Gaps = 3/148 (2%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T G + EL+ PK NF + C Y Y G FHRVIK F++QGGD
Sbjct: 19 TTAGPLDIELWPKEAPKAVRNFVQLCLEGY--------YDGTLFHRVIKSFLVQGGD-PT 69
Query: 264 GDGTGVMSIYGGSTFADE-NFGLKHDSPGLLSMANSGKD-TNGCQFFITCAKCNFLDNKH 91
G GTG SIYG + FADE + L+ + GL++ AN+G +NG QFFI+ +C++LD K+
Sbjct: 70 GSGTGGESIYG-APFADEFHTRLRFNHRGLVACANAGTPHSNGSQFFISLDRCDWLDKKN 128
Query: 90 VVFGRVI-DGLLVMRKIENVPTGPNNKP 10
+FG+V D + + + ++ T +++P
Sbjct: 129 TIFGKVTGDSIFNLLALADIETDKDDRP 156
>06_03_1076 +
27409107-27409204,27409731-27409835,27409915-27410032,
27410180-27410230,27410328-27410419,27410558-27410657,
27411018-27411137,27411227-27411295,27411468-27411514,
27411597-27411652,27412293-27412333,27412570-27412675,
27413891-27414023,27414096-27414645
Length = 561
Score = 83.4 bits (197), Expect = 1e-16
Identities = 51/153 (33%), Positives = 78/153 (50%), Gaps = 8/153 (5%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T +G + +L D+ P T++NF + C +Y Y G FH+V KDF+ Q GD
Sbjct: 7 TSVGDIEVDLHTDMCPLTTKNFLKLCKMKY--------YNGCLFHKVEKDFLAQTGD-PT 57
Query: 264 GDGTGVMSIY-----GGSTFADENF--GLKHDSPGLLSMANSGKDTNGCQFFITCA-KCN 109
G G G S+Y + F D+ L+H G ++MA++G++ N QF+IT +
Sbjct: 58 GTGAGGDSVYKFLYGDQARFFDDEIRPDLRHSKKGTIAMASAGENCNASQFYITLRDDVD 117
Query: 108 FLDNKHVVFGRVIDGLLVMRKIENVPTGPNNKP 10
+LD+KH VFG V +G + KI +P
Sbjct: 118 YLDDKHTVFGMVAEGFDTLTKISETYVDDKGRP 150
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 79.0 bits (186), Expect = 3e-15
Identities = 41/70 (58%), Positives = 47/70 (67%), Gaps = 4/70 (5%)
Frame = -3
Query: 480 NPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGV----PLGYKGATF 313
NP VFFDI +G R+ FELFADVVPKT+ENFR CTGE R GV PL +KG
Sbjct: 7 NPHVFFDIAIGGRAAERITFELFADVVPKTTENFRALCTGE-RGLGVSTQKPLYFKGTNM 65
Query: 312 HRVIKDFMIQ 283
HR++K FM Q
Sbjct: 66 HRILKGFMAQ 75
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = -3
Query: 99 NKHVVFGRVIDGLLVMRKIENV 34
+KHVVFG+V+ G+ +++K+E V
Sbjct: 93 SKHVVFGKVVTGMPLLKKLEAV 114
>07_03_0359 -
17201711-17201803,17202185-17202332,17202437-17202574,
17204331-17204416,17205233-17205283,17205774-17205858,
17205930-17206081
Length = 250
Score = 60.9 bits (141), Expect = 8e-10
Identities = 42/145 (28%), Positives = 67/145 (46%)
Frame = -3
Query: 444 TEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVN 265
T G + E++ D + F C + +KG F VIK+F+IQGGDF +
Sbjct: 100 TAKGSITIEIYKDASADVVDRFVSLCKSNH--------FKGMPFRHVIKNFVIQGGDF-D 150
Query: 264 GDGTGVMSIYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHVV 85
+G I + KH++ + + G FIT A L++K VV
Sbjct: 151 FNGAAQEWILKAKASGENALSPKHEA--FMIGTTKNPNNKGFDLFITTAPIPDLNDKLVV 208
Query: 84 FGRVIDGLLVMRKIENVPTGPNNKP 10
FG+VI+G ++++IE V T + +P
Sbjct: 209 FGQVINGQDIVQEIEEVDTDEHYQP 233
>02_01_0086 + 613113-613532
Length = 139
Score = 51.6 bits (118), Expect = 5e-07
Identities = 41/127 (32%), Positives = 58/127 (45%)
Frame = -3
Query: 420 ELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMIQGGDFVNGDGTGVMS 241
EL+AD+VP T+ENFR T + PL YKG + ++G G
Sbjct: 2 ELYADLVPLTAENFRALYTKK------PLHYKGLCLSQHYPRIHVEGRRLRQGPWHR-RR 54
Query: 240 IYGGSTFADENFGLKHDSPGLLSMANSGKDTNGCQFFITCAKCNFLDNKHVVFGRVIDGL 61
++ +ENF L HD P L N + N QFF + + D +VVFG +I G
Sbjct: 55 VHLRRHLPNENFLLPHDRPWL---PNGSAENNISQFF---TRVPWFDGNYVVFGCIISGF 108
Query: 60 LVMRKIE 40
++ IE
Sbjct: 109 HNLKAIE 115
>06_03_1075 +
27399279-27399376,27399449-27399555,27400791-27400898,
27401763-27401860,27401983-27402033,27402137-27402228,
27402360-27402459,27402765-27402884,27402977-27403045,
27403299-27403345,27403428-27403483,27404760-27404800,
27405155-27405260,27406728-27406860,27406937-27407357
Length = 548
Score = 50.0 bits (114), Expect = 2e-06
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = -3
Query: 201 LKHDSPGLLSMANSGKDTNGCQFFITCAK-CNFLDNKHVVFGRVIDGLLVMRKIENVPTG 25
L+H G ++MA++G++ N QF+IT ++LD+KH VFG V +G + KI
Sbjct: 116 LRHSKMGTIAMASAGENCNASQFYITLRDGVDYLDDKHTVFGMVAEGFDTITKINETYVD 175
Query: 24 PNNKP 10
+P
Sbjct: 176 DKGRP 180
>08_02_0053 + 11721658-11721689,11721960-11722710
Length = 260
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/142 (26%), Positives = 62/142 (43%), Gaps = 17/142 (11%)
Frame = -3
Query: 438 IGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIK-DFMIQGGDFVNG 262
+GR+IF L+ ++P T+ NF+ CT Y+G H++++ F + G
Sbjct: 127 LGRVIFGLYGRLLPLTTANFKAACTS--------AAYRGTLVHKLLQGQFFVAGRQGPRR 178
Query: 261 DGTGVMS----IYGGSTFADENFGLKHDSPGLLSMANSGKDT----------NGCQFFIT 124
D V + T + F LKH PG LS+ D + +F +T
Sbjct: 179 DRGEVQPPTGLVRNAETIDPKAFELKHARPGTLSLCLGQNDDDDDIKLNPNYHNVEFLVT 238
Query: 123 C--AKCNFLDNKHVVFGRVIDG 64
C LD +++VFG V++G
Sbjct: 239 TGPGPCPELDGQNIVFGTVLEG 260
>11_06_0322 +
22358505-22358642,22358690-22358791,22359444-22359557,
22359643-22359791,22360155-22360227,22360308-22360397,
22360752-22360791,22361579-22361661,22362614-22362775
Length = 316
Score = 44.8 bits (101), Expect = 6e-05
Identities = 45/146 (30%), Positives = 62/146 (42%), Gaps = 5/146 (3%)
Frame = -3
Query: 450 GTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLG-YKGATFHRVIKDFMIQGGD 274
G T G + F F V PKT E+ + V LG Y F RV K F+ Q
Sbjct: 79 GITTHGDIEFGFFPHVAPKTVEHIYKL---------VRLGCYNTNHFFRVDKGFVAQVAS 129
Query: 273 FVNGDGTGV---MSIYGGSTFADENFGLKHDSPGLLSMA-NSGKDTNGCQFFITCAKCNF 106
V G + + E +KH G+LSM +S ++ G F I
Sbjct: 130 VVGGRTAPMNDEQQEEAEKSVVGEFSTVKHVR-GILSMGRHSDPNSGGSSFSILLGDAPH 188
Query: 105 LDNKHVVFGRVIDGLLVMRKIENVPT 28
LD ++ VFGR+ G +RK+E +PT
Sbjct: 189 LDGQYAVFGRLTKGDDTLRKLEQLPT 214
>10_01_0310 + 3425099-3425218
Length = 39
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/25 (64%), Positives = 19/25 (76%)
Frame = -3
Query: 435 GRMIFELFADVVPKTSENFREFCTG 361
G ++ E FAD VPKT+ENFR CTG
Sbjct: 8 GSVVIEQFADKVPKTTENFRPMCTG 32
>01_01_0077 - 585670-585787,585921-586687
Length = 294
Score = 39.1 bits (87), Expect = 0.003
Identities = 20/44 (45%), Positives = 26/44 (59%)
Frame = -3
Query: 147 NGCQFFITCAKCNFLDNKHVVFGRVIDGLLVMRKIENVPTGPNN 16
NG +F IT LD +V GRV+DG+ V+ KI VPT +N
Sbjct: 206 NGTEFVITTGDAPELDASALVVGRVVDGMDVLGKIAAVPTVKDN 249
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/70 (25%), Positives = 30/70 (42%)
Frame = -3
Query: 486 PNNPVVFFDITVGTTEIGRMIFELFADVVPKTSENFREFCTGEYRRDGVPLGYKGATFHR 307
P F D+++G GR+ LF D P + F TG +GY+ F +
Sbjct: 72 PVTAKAFLDVSIGGEPAGRITIGLFGDAAPAGASRFLSLVTG--------VGYRRKEFVK 123
Query: 306 VIKDFMIQGG 277
++ ++ GG
Sbjct: 124 IVPGYVQHGG 133
>06_01_0893 -
6834350-6834464,6835042-6835218,6835301-6835350,
6836348-6836416,6836495-6836593,6836681-6836759,
6837604-6837704,6838645-6838713,6839548-6839588,
6839793-6841159,6841472-6841575,6841914-6842351,
6843040-6843567
Length = 1078
Score = 29.1 bits (62), Expect = 3.2
Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = -3
Query: 462 DITVGTTEIGRMIFELFAD--VVPKTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFM 289
++T+G ++F++ AD VP R++ TG DG K I D M
Sbjct: 308 ELTIGLARHRALLFKVLADSLAVPCRLVKGRQY-TGS--DDGALSIVKFNDGREYIVDLM 364
Query: 288 IQGGDFVNGDGTGVMSIYGGSTFADENFGLKHD 190
G + DG G+ + S FAD + K D
Sbjct: 365 SDPGTLIPSDGAGLGREFEDSLFADSHHVNKDD 397
>01_01_0126 -
1159370-1159657,1161665-1161811,1162832-1162891,
1163021-1163203,1163336-1163569
Length = 303
Score = 29.1 bits (62), Expect = 3.2
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = +2
Query: 212 SSAKVLPPYMLITPVPSPFTKSPP 283
SSA +LPP PV SP K PP
Sbjct: 5 SSASLLPPPSTFVPVLSPLRKPPP 28
>06_01_0112 -
876213-876857,877245-877622,877707-877813,878271-878319,
880413-880637,880741-880935
Length = 532
Score = 28.7 bits (61), Expect = 4.2
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 10/70 (14%)
Frame = -3
Query: 432 RMIFELFADVVP----KTSENFREFCTGEYRRDGVPLGYKGATFHRVIKDFMI------Q 283
R +F FADVV K E+ FC ++DG G +G RV+ M+ +
Sbjct: 49 RPLFPAFADVVLVCTLKVGEDISRFCHAVQQQDGSEEGQRGM---RVVVGLMVSSQRERR 105
Query: 282 GGDFVNGDGT 253
G + NG G+
Sbjct: 106 GSSYSNGSGS 115
>04_04_0483 -
25554531-25554605,25554681-25555644,25555722-25555847,
25556162-25556331,25556431-25556526
Length = 476
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 182 PGESCFKPKFSSAKVLPPYMLITPVPSPFTKSPP 283
PG+ + K S A L P +TP SP SPP
Sbjct: 84 PGKELSEQKASPASSLLPEKQVTPPLSPVAHSPP 117
>01_04_0018 +
15128174-15128316,15128445-15128544,15129573-15129758,
15129877-15129924,15130006-15130209,15130476-15130565,
15130667-15130747,15130827-15130889,15131794-15131832,
15131914-15132000,15132103-15132252,15132331-15132386,
15132493-15132775,15132989-15133132,15133233-15133451,
15133528-15133695,15133868-15133969
Length = 720
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -3
Query: 156 KDTNGCQFFITCAKCNFLDNKHVVFGRVIDGLLVMRKI 43
K+ +GC+ + K L +F R+ DGLL + KI
Sbjct: 244 KENSGCKVLLCDEKTEDLARMFRLFSRITDGLLPVSKI 281
>03_05_0115 - 20973942-20974292,20974571-20974689,20974771-20974894
Length = 197
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 4/59 (6%)
Frame = -3
Query: 363 GEYRRDGVPLGYKGATFHRVIKDFMIQGG----DFVNGDGTGVMSIYGGSTFADENFGL 199
G+ +R P K + H ++ D +Q G D +GDG G + GS+ +D++ G+
Sbjct: 135 GKRKRHVRPKKKKIRSVHSLMNDVTMQPGPSSSDSEDGDGNGAGDVSEGSSDSDKSHGV 193
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,950,564
Number of Sequences: 37544
Number of extensions: 340867
Number of successful extensions: 991
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 905
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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