Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d18
         (325 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    27   0.70 
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|...    26   1.2  
SPCC4G3.10c |rhp42|rhp4b|DNA repair protein Rhp42|Schizosaccharo...    25   2.1  
SPAC13G6.08 |||Cdc20/Fizzy family WD repeat protein|Schizosaccha...    25   2.8  
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar...    25   3.7  
SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces pomb...    25   3.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    24   6.5  
SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr 2...    23   8.6  

>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 27.1 bits (57), Expect = 0.70
 Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
 Frame = +3

Query: 147 DGFCNATNALLNAQAPDLI----ECDPALGLLHIFSAGGDFVVSQACVSTYRDLVDDT 308
           DG     +  L+A  P  +      D  LG+       G  V  QACVS YR  ++ T
Sbjct: 551 DGLYYIIDGFLDATCPSKLTFSTSYDTDLGMHSFMIKPGGIVNYQACVSNYRSFINVT 608


>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -2

Query: 312 FPYRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRILS 199
           +P      C  +  LET   +RLR K      +DRI+S
Sbjct: 515 YPLTSSEFCDVANSLETLAIIRLRTKQRNGKPQDRIIS 552


>SPCC4G3.10c |rhp42|rhp4b|DNA repair protein
           Rhp42|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 686

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = -2

Query: 252 LRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTV 73
           L  R K       ++ L S  P+R  K +  +KNHP         +  + L  A P +T 
Sbjct: 420 LAKRNKDAEDIYEEKELESKVPIREPKSFADFKNHPEFVLIRHLRREEALLPNAKPVKTA 479

Query: 72  T 70
           T
Sbjct: 480 T 480


>SPAC13G6.08 |||Cdc20/Fizzy family WD repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 535

 Score = 25.0 bits (52), Expect = 2.8
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 51  VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIE 206
           ++C ++ LP V D +C    V S   S+L    G C  T++++ A + + I+
Sbjct: 446 LECLVSVLPSVPDIRC----VHSVLTSQLNETTGRCEMTDSIIIASSNETIK 493


>SPAC1705.03c ||SPAC23H4.19|conserved fungal
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = -2

Query: 93  ADPSRTVTGSMNNLRLDCAENVKFNGGASNS 1
           A P  T  GS+N   L   + ++FN G S+S
Sbjct: 109 ATPELTSVGSLNLAVLPNLQELQFNAGLSDS 139


>SPBC1677.03c |||threonine ammonia-lyase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 3.7
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 140 GQLACSAGNHA 108
           G +ACSAGNHA
Sbjct: 163 GVIACSAGNHA 173


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -2

Query: 222  PVRDRILSSPEPVRLAKRWWRYK 154
            P+ +R     +PV  +K WW  K
Sbjct: 1332 PIPERAPLVNDPVNYSKNWWNVK 1354


>SPBC19F5.04 |||aspartate kinase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 519

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 129 LQRWKSRSCLYTADPSRTVTGSM 61
           LQ WK    ++TADP +  T  +
Sbjct: 244 LQIWKEVDGIFTADPRKVPTARL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,342,350
Number of Sequences: 5004
Number of extensions: 24689
Number of successful extensions: 59
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 87815546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)