Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d18
(325 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0977 - 12842948-12843572,12844326-12844741 30 0.36
05_04_0312 - 20123892-20124085,20124183-20124508,20124728-201247... 29 0.84
03_05_1008 - 29644352-29645297,29645381-29645769 29 0.84
12_02_0800 + 23299674-23299678,23299714-23299791,23299876-232999... 29 1.1
11_06_0768 + 27129007-27129038,27129140-27129220,27129723-271300... 29 1.1
06_03_1208 - 28422941-28423139,28423854-28424434,28424705-284250... 27 4.5
04_04_1647 + 35032328-35033803 27 4.5
04_01_0314 - 4243928-4244361,4245178-4245415 27 4.5
03_04_0171 + 18001993-18001995,18002527-18002640,18002958-180031... 27 4.5
04_04_1012 - 30104401-30104955,30105066-30106841 26 5.9
04_04_1005 - 30043698-30044252,30044363-30046138 26 5.9
03_02_0504 - 8976973-8979414 26 5.9
03_01_0106 - 839585-839614,839725-840825,840901-841122 26 5.9
09_04_0377 + 17086775-17088310 26 7.8
08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054 26 7.8
07_01_0741 - 5651773-5651880,5651987-5652055,5652233-5652280,565... 26 7.8
03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058 26 7.8
>03_02_0977 - 12842948-12843572,12844326-12844741
Length = 346
Score = 30.3 bits (65), Expect = 0.36
Identities = 15/31 (48%), Positives = 18/31 (58%)
Frame = -3
Query: 167 GGVTKTILAGQLACSAGNHAVVSTLLIRHAR 75
G TK ++AG LA +G AVV LL H R
Sbjct: 209 GYATKRLVAGLLAVESGQDAVVRGLLFEHRR 239
>05_04_0312 -
20123892-20124085,20124183-20124508,20124728-20124732,
20125063-20125670,20125744-20125884,20126067-20126194,
20126288-20126329,20126613-20126755
Length = 528
Score = 29.1 bits (62), Expect = 0.84
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -2
Query: 294 SLCTCSRMLETRQNLRLRRKCEASPVRD 211
SLC C+ R R+RR+CE RD
Sbjct: 18 SLCVCACSCFLRDGGRMRRRCEGGSARD 45
>03_05_1008 - 29644352-29645297,29645381-29645769
Length = 444
Score = 29.1 bits (62), Expect = 0.84
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 159 YKNHPGRSTRLQRWKSRSCLYTADPS-RTVTGSMNNL 52
Y+N PG TR+ + S S L DP+ + +TG MN L
Sbjct: 103 YRNAPGVETRVSDFGSTSTLRYLDPNLKLLTGYMNVL 139
>12_02_0800 + 23299674-23299678,23299714-23299791,23299876-23299920,
23300052-23300415,23300493-23300574,23300793-23300873,
23300974-23302106,23302202-23302350,23302426-23302516,
23303628-23305940
Length = 1446
Score = 28.7 bits (61), Expect = 1.1
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 6/73 (8%)
Frame = -2
Query: 306 YRPPSLCTCSRMLETRQNLRLRRKCEASPVRDRIL------SSPEPVRLAKRWWRYKNHP 145
Y P L + RQ L + CE + +RD+ + + PE AK+W K
Sbjct: 1060 YVPKPLSKELQQQNLRQILPSEKSCEENKIRDKEIVERSTGAKPETAPEAKKWEGKKTSK 1119
Query: 144 GRSTRLQRWKSRS 106
G W+ R+
Sbjct: 1120 GHGKSHPSWRRRN 1132
>11_06_0768 + 27129007-27129038,27129140-27129220,27129723-27130089,
27130165-27130255,27130515-27130595,27130764-27131830,
27132060-27132071,27132465-27133209,27133210-27135244,
27135712-27135787,27135925-27136029,27137080-27137166
Length = 1592
Score = 28.7 bits (61), Expect = 1.1
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = -2
Query: 198 SPEPVRLAKRWWRYKNHPGRSTRLQ 124
SPEP + KR + +K H G +RL+
Sbjct: 1013 SPEPDKQVKRQFEFKTHDGSDSRLE 1037
>06_03_1208 -
28422941-28423139,28423854-28424434,28424705-28425078,
28425235-28425339,28425902-28425970,28426084-28426156,
28426395-28426478,28426616-28426648,28426731-28426790,
28427535-28427627,28427851-28427970,28428804-28428886,
28428887-28429007,28429114-28429164,28429245-28429333,
28429429-28429561,28430220-28430354,28430581-28430952,
28431679-28431796,28431883-28431998,28432131-28432442
Length = 1106
Score = 26.6 bits (56), Expect = 4.5
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 208 HSIKSGACAFSKALVALQKPSWQVNSLAALEITQLSLHC*SVTH 77
+S S AFSK L + KP+W V+SLA + S S+T+
Sbjct: 136 NSKMSNLRAFSKGLPVV-KPAWVVDSLAENRLLSCSFSSPSLTN 178
>04_04_1647 + 35032328-35033803
Length = 491
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +3
Query: 63 LNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLI 203
L+ +PC + QCR NC SAAS L ++++ L+ + P +
Sbjct: 112 LSWVPCTSSYQCR-NCSSLSAASPLHVFHPKNSSSSRLIGCRNPSCL 157
>04_01_0314 - 4243928-4244361,4245178-4245415
Length = 223
Score = 26.6 bits (56), Expect = 4.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 225 SPVRDRILSSPEPVRLAKRWW 163
S ++L+SP RL +RWW
Sbjct: 203 SAFTSQLLASPTAARLGRRWW 223
>03_04_0171 +
18001993-18001995,18002527-18002640,18002958-18003127,
18003408-18003684
Length = 187
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = +3
Query: 57 CSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQ 188
C L+R P VT CR ++S++S T C A L A+
Sbjct: 131 CCLSRAPTVTSFPCR--ATVASSSSGATVVASSCGAAACLSGAR 172
>04_04_1012 - 30104401-30104955,30105066-30106841
Length = 776
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 315 AFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVR--DRILSSP 193
A P R P C+R L + L++R + + P R +RI P
Sbjct: 645 ASPPRSPPRSPCARPLHMGRRLKIRTRQHSQPTRRSERIAKQP 687
>04_04_1005 - 30043698-30044252,30044363-30046138
Length = 776
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 315 AFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVR--DRILSSP 193
A P R P C+R L + L++R + + P R +RI P
Sbjct: 645 ASPPRSPPRSPCARPLHMGRRLKIRTRQHSQPTRRSERIAKQP 687
>03_02_0504 - 8976973-8979414
Length = 813
Score = 26.2 bits (55), Expect = 5.9
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = -2
Query: 315 AFPYRPPSLCTCSRMLETRQNLRLRRKCEASPVR--DRILSSP 193
A P R P C+R L + L++R + + P R +RI P
Sbjct: 682 ASPPRSPPRSPCARPLHMGRRLKIRTRQHSQPTRRSERIAKQP 724
>03_01_0106 - 839585-839614,839725-840825,840901-841122
Length = 450
Score = 26.2 bits (55), Expect = 5.9
Identities = 10/27 (37%), Positives = 13/27 (48%)
Frame = -2
Query: 165 WRYKNHPGRSTRLQRWKSRSCLYTADP 85
W Y NH R ++RW S L +P
Sbjct: 239 WAYGNHGNRIHEMERWYSEFQLMGVEP 265
>09_04_0377 + 17086775-17088310
Length = 511
Score = 25.8 bits (54), Expect = 7.8
Identities = 20/55 (36%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWR-YKNHPGRSTRLQRW 118
SR R+N R R SP R R SP P R +R W Y GR + W
Sbjct: 33 SRSPSPRRNRRRDRS--PSPYRSRRDRSPSPYRDRRRQWSPYHRDRGRDVE-REW 84
>08_01_0994 + 10071081-10072163,10072704-10074530,10074977-10075054
Length = 995
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
Frame = -3
Query: 296 QVSVRAHACLRHDKISACGENVK----QAQCGIAFYQVRSL 186
Q S+ HACL H +S C N++ +A CG+ Q +L
Sbjct: 508 QGSISKHACLIHLDLSGC-SNIRVIQPEALCGLTKLQFLNL 547
>07_01_0741 -
5651773-5651880,5651987-5652055,5652233-5652280,
5652487-5652657,5652746-5652899,5653720-5653797,
5654165-5654208,5654505-5654604,5655621-5655775
Length = 308
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +2
Query: 5 LEAPPLNFTF----SAQSRRRLFIEPVTVRDGSAV*RQLRDFQRCKRVDLPG 148
++AP L F +A+ R L P T R G + R RCKRVD+ G
Sbjct: 25 IDAPGLRFLVGQLVAARRYRVLVCAPDTDRSGVSHSITWRPALRCKRVDIDG 76
>03_03_0063 - 14176137-14176769,14178220-14178513,14178966-14179058
Length = 339
Score = 25.8 bits (54), Expect = 7.8
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 2/35 (5%)
Frame = -2
Query: 309 PYRPPSLC--TCSRMLETRQNLRLRRKCEASPVRD 211
P PP L T R++E + RR+C ASP D
Sbjct: 266 PVAPPPLAAATSCRLVELGPSTTERRRCAASPSGD 300
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,834,107
Number of Sequences: 37544
Number of extensions: 199609
Number of successful extensions: 613
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 423156300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -