Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d18
(325 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC037988-1|AAH37988.1| 904|Homo sapiens MICAL-like 2 protein. 29 4.3
AK126808-1|BAC86702.1| 493|Homo sapiens protein ( Homo sapiens ... 29 4.3
AK027124-1|BAB15667.1| 704|Homo sapiens protein ( Homo sapiens ... 29 4.3
BC128152-1|AAI28153.1| 446|Homo sapiens AGBL1 protein protein. 28 5.6
BC052240-1|AAH52240.1| 403|Homo sapiens zinc finger, HIT type 2... 28 5.6
BC038089-1|AAH38089.1| 174|Homo sapiens ZNHIT2 protein protein. 28 5.6
BC029825-1|AAH29825.1| 177|Homo sapiens ZNHIT2 protein protein. 28 5.6
AK223358-1|BAD97078.1| 403|Homo sapiens zinc finger, HIT domain... 28 5.6
AK223333-1|BAD97053.1| 403|Homo sapiens zinc finger, HIT domain... 28 5.6
AK056872-1|BAB71299.1| 478|Homo sapiens protein ( Homo sapiens ... 28 5.6
AF119497-1|AAF23591.1| 403|Homo sapiens C11orf5 protein. 28 5.6
BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated prot... 28 7.4
BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated prot... 28 7.4
AY597812-1|AAT09005.1| 238|Homo sapiens UHS KerB-like protein. 28 7.4
AJ628246-1|CAF31638.1| 167|Homo sapiens keratin associated prot... 28 7.4
AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated prot... 28 7.4
AJ406935-1|CAC27574.1| 98|Homo sapiens keratin associated prot... 28 7.4
AB126076-1|BAD20203.1| 165|Homo sapiens keratin associated prot... 28 7.4
AB126072-1|BAD20199.1| 238|Homo sapiens keratin associated prot... 28 7.4
BC065183-1|AAH65183.1| 123|Homo sapiens PSCA protein protein. 27 9.8
BC023582-1|AAH23582.1| 123|Homo sapiens prostate stem cell anti... 27 9.8
AY358912-1|AAQ89271.1| 119|Homo sapiens prostate stem cell A pr... 27 9.8
AK056814-1|BAB71289.1| 350|Homo sapiens protein ( Homo sapiens ... 27 9.8
AJ297436-1|CAB97347.1| 123|Homo sapiens prostate stem cell anti... 27 9.8
AF043498-1|AAC39607.1| 123|Homo sapiens prostate stem cell anti... 27 9.8
>BC037988-1|AAH37988.1| 904|Homo sapiens MICAL-like 2 protein.
Length = 904
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 225 SPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWK 115
SP R R L+ P + + W R PG+ R+Q WK
Sbjct: 660 SPPRRRRLAVPASLDVCDNWLR-PEPPGQEARVQSWK 695
>AK126808-1|BAC86702.1| 493|Homo sapiens protein ( Homo sapiens
cDNA FLJ44858 fis, clone BRALZ2003119. ).
Length = 493
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 225 SPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWK 115
SP R R L+ P + + W R PG+ R+Q WK
Sbjct: 249 SPPRRRRLAVPASLDVCDNWLR-PEPPGQEARVQSWK 284
>AK027124-1|BAB15667.1| 704|Homo sapiens protein ( Homo sapiens
cDNA: FLJ23471 fis, clone HSI11969. ).
Length = 704
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = -2
Query: 225 SPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWK 115
SP R R L+ P + + W R PG+ R+Q WK
Sbjct: 460 SPPRRRRLAVPASLDVCDNWLR-PEPPGQEARVQSWK 495
>BC128152-1|AAI28153.1| 446|Homo sapiens AGBL1 protein protein.
Length = 446
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 219 VRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYT 94
V++ +L P +R YKNH +ST + S C YT
Sbjct: 324 VKEALLGKPTWIRTGHEICYYKNHYRQSTAVAGRASGKCYYT 365
>BC052240-1|AAH52240.1| 403|Homo sapiens zinc finger, HIT type 2
protein.
Length = 403
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSR 109
SR+ + LR +R+ E P + S P P L+ W R PG +R SR
Sbjct: 62 SRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLA--PGEKAAFERLLSR 116
>BC038089-1|AAH38089.1| 174|Homo sapiens ZNHIT2 protein protein.
Length = 174
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSR 109
SR+ + LR +R+ E P + S P P L+ W R PG +R SR
Sbjct: 62 SRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLA--PGEKAAFERLLSR 116
>BC029825-1|AAH29825.1| 177|Homo sapiens ZNHIT2 protein protein.
Length = 177
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSR 109
SR+ + LR +R+ E P + S P P L+ W R PG +R SR
Sbjct: 62 SRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLA--PGEKAAFERLLSR 116
>AK223358-1|BAD97078.1| 403|Homo sapiens zinc finger, HIT domain
containing 2 variant protein.
Length = 403
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSR 109
SR+ + LR +R+ E P + S P P L+ W R PG +R SR
Sbjct: 62 SRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLA--PGEKAAFERLLSR 116
>AK223333-1|BAD97053.1| 403|Homo sapiens zinc finger, HIT domain
containing 2 variant protein.
Length = 403
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSR 109
SR+ + LR +R+ E P + S P P L+ W R PG +R SR
Sbjct: 62 SRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLA--PGEKAAFERLLSR 116
>AK056872-1|BAB71299.1| 478|Homo sapiens protein ( Homo sapiens
cDNA FLJ32310 fis, clone PROST2003102. ).
Length = 478
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = -2
Query: 219 VRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSRSCLYT 94
V++ +L P +R YKNH +ST + S C YT
Sbjct: 356 VKEDLLGKPTWIRTGHEICYYKNHYRQSTAVAGGASGKCYYT 397
>AF119497-1|AAF23591.1| 403|Homo sapiens C11orf5 protein.
Length = 403
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/57 (31%), Positives = 25/57 (43%)
Frame = -2
Query: 279 SRMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKNHPGRSTRLQRWKSR 109
SR+ + LR +R+ E P + S P P L+ W R PG +R SR
Sbjct: 62 SRLASALRRLRQQRETEDEPGEAGLSSGPAPGGLSGLWERLA--PGEKAAFERLLSR 116
>BC103846-1|AAI03847.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 48 GVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNAT 167
GV L C T CR +C +SS L CQ C T
Sbjct: 79 GVSSCCRPLCCQTT--CRPSCGVSSCCRPLCCQTTCCRTT 116
>BC103845-1|AAI03846.1| 127|Homo sapiens keratin associated protein
4-10 protein.
Length = 127
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 48 GVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNAT 167
GV L C T CR +C +SS L CQ C T
Sbjct: 79 GVSSCCRPLCCQTT--CRPSCGVSSCCRPLCCQTTCCRTT 116
>AY597812-1|AAT09005.1| 238|Homo sapiens UHS KerB-like protein.
Length = 238
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/45 (24%), Positives = 16/45 (35%)
Frame = +3
Query: 75 PCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIEC 209
PC + C C SS CQ C ++ + P +C
Sbjct: 192 PCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQC 236
>AJ628246-1|CAF31638.1| 167|Homo sapiens keratin associated protein
5-9 protein.
Length = 167
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/45 (24%), Positives = 16/45 (35%)
Frame = +3
Query: 75 PCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIEC 209
PC + C C SS CQ C ++ + P +C
Sbjct: 121 PCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQC 165
>AJ406942-1|CAC27581.1| 127|Homo sapiens keratin associated protein
4.10 protein.
Length = 127
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/40 (37%), Positives = 17/40 (42%)
Frame = +3
Query: 48 GVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFCNAT 167
GV L C T CR +C +SS L CQ C T
Sbjct: 79 GVSSCCRPLCCQTT--CRPSCGVSSCCRPLCCQTTCCRTT 116
>AJ406935-1|CAC27574.1| 98|Homo sapiens keratin associated protein
4.3 protein.
Length = 98
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/50 (28%), Positives = 19/50 (38%)
Frame = +3
Query: 69 RLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIECDPA 218
R C CR +C ISS CQ C + + + P C P+
Sbjct: 4 RPSCCISSCCRPSCCISSCCKPSCCQTTCCRPSCCISSCYRPQC--CQPS 51
>AB126076-1|BAD20203.1| 165|Homo sapiens keratin associated protein
protein.
Length = 165
Score = 27.9 bits (59), Expect = 7.4
Identities = 12/45 (26%), Positives = 15/45 (33%)
Frame = +3
Query: 75 PCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIEC 209
PC C C SS CQ CN + + P +C
Sbjct: 119 PCCCQSSCCKPCCCSSGCGSSCCQSSCCNPCCSQSSCCVPVCCQC 163
>AB126072-1|BAD20199.1| 238|Homo sapiens keratin associated protein
protein.
Length = 238
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/45 (24%), Positives = 16/45 (35%)
Frame = +3
Query: 75 PCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIEC 209
PC + C C SS CQ C ++ + P +C
Sbjct: 192 PCCSQSSCCKPCCCSSGCGSSCCQSSCCKPCSSQSSCCVPICCQC 236
>BC065183-1|AAH65183.1| 123|Homo sapiens PSCA protein protein.
Length = 123
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 CSLNRLPCVTDQQCRDNCVISSAASELTCQD-GFCNATNALLNAQAPDLIECDPALGLL 230
CSLN CV D Q D V +TC D CNA+ A A ++ PALGLL
Sbjct: 66 CSLN---CVDDSQ--DYYV---GKKNITCCDTDLCNASGAHALQPAAAILALLPALGLL 116
>BC023582-1|AAH23582.1| 123|Homo sapiens prostate stem cell antigen
protein.
Length = 123
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 CSLNRLPCVTDQQCRDNCVISSAASELTCQD-GFCNATNALLNAQAPDLIECDPALGLL 230
CSLN CV D Q D V +TC D CNA+ A A ++ PALGLL
Sbjct: 66 CSLN---CVDDSQ--DYYV---GKKNITCCDTDLCNASGAHALQPAAAILALLPALGLL 116
>AY358912-1|AAQ89271.1| 119|Homo sapiens prostate stem cell A
protein.
Length = 119
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 CSLNRLPCVTDQQCRDNCVISSAASELTCQD-GFCNATNALLNAQAPDLIECDPALGLL 230
CSLN CV D Q D V +TC D CNA+ A A ++ PALGLL
Sbjct: 62 CSLN---CVDDSQ--DYYV---GKKNITCCDTDLCNASGAHALQPAAAILALLPALGLL 112
>AK056814-1|BAB71289.1| 350|Homo sapiens protein ( Homo sapiens
cDNA FLJ32252 fis, clone PROST1000167, weakly similar to
SYNAPSIN I. ).
Length = 350
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 201 SSPEPV-RLAKRWWRYKNHPGRSTRLQRWKSRSCLYTADPSRTVTG 67
++P P+ + A W HP R++ W+ +CL +A +R TG
Sbjct: 279 ATPRPIPKPALTLWGL--HPLEEGRVKAWRCAACLTSAQGARQATG 322
>AJ297436-1|CAB97347.1| 123|Homo sapiens prostate stem cell antigen
protein.
Length = 123
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 CSLNRLPCVTDQQCRDNCVISSAASELTCQD-GFCNATNALLNAQAPDLIECDPALGLL 230
CSLN CV D Q D V +TC D CNA+ A A ++ PALGLL
Sbjct: 66 CSLN---CVDDSQ--DYYV---GKKNITCCDTDLCNASGAHALQPAAAILALLPALGLL 116
>AF043498-1|AAC39607.1| 123|Homo sapiens prostate stem cell antigen
protein.
Length = 123
Score = 27.5 bits (58), Expect = 9.8
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +3
Query: 57 CSLNRLPCVTDQQCRDNCVISSAASELTCQD-GFCNATNALLNAQAPDLIECDPALGLL 230
CSLN CV D Q D V +TC D CNA+ A A ++ PALGLL
Sbjct: 66 CSLN---CVDDSQ--DYYV---GKKNITCCDTDLCNASGAHALQPAAAILALLPALGLL 116
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,397,477
Number of Sequences: 237096
Number of extensions: 994116
Number of successful extensions: 3069
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 2815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3069
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1627597384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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