Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d18
         (325 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ507278-1|ABG24573.1|  829|Drosophila melanogaster roadkill iso...    29   1.8  
BT021321-1|AAX33469.1|  829|Drosophila melanogaster RE09049p pro...    29   1.8  
AE014297-1781|AAF55008.2|  829|Drosophila melanogaster CG9924-PE...    29   1.8  
AY122270-1|AAM52782.1|  257|Drosophila melanogaster SD27025p pro...    27   5.6  
AE014298-776|AAF46063.1|  257|Drosophila melanogaster CG12410-PA...    27   5.6  
AE014296-816|AAF47878.1|  116|Drosophila melanogaster CG11582-PA...    27   5.6  
AB210899-1|BAD95485.1|  257|Drosophila melanogaster crossveinles...    27   5.6  

>DQ507278-1|ABG24573.1|  829|Drosophila melanogaster roadkill
           isoform E protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 138 STRLQRWKSRSCLYTADPSRTVTGSMNNLRLDCAENVKFNGGASNS 1
           S+ LQ   +RS      PS +   S NN    CA N  +NGG SNS
Sbjct: 198 SSNLQHILTRSA---PSPSSSAISS-NNCSSACAGNTHYNGGNSNS 239


>BT021321-1|AAX33469.1|  829|Drosophila melanogaster RE09049p
           protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 138 STRLQRWKSRSCLYTADPSRTVTGSMNNLRLDCAENVKFNGGASNS 1
           S+ LQ   +RS      PS +   S NN    CA N  +NGG SNS
Sbjct: 198 SSNLQHILTRSA---PSPSSSAISS-NNCSSACAGNTHYNGGNSNS 239


>AE014297-1781|AAF55008.2|  829|Drosophila melanogaster CG9924-PE,
           isoform E protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 1.8
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 138 STRLQRWKSRSCLYTADPSRTVTGSMNNLRLDCAENVKFNGGASNS 1
           S+ LQ   +RS      PS +   S NN    CA N  +NGG SNS
Sbjct: 198 SSNLQHILTRSA---PSPSSSAISS-NNCSSACAGNTHYNGGNSNS 239


>AY122270-1|AAM52782.1|  257|Drosophila melanogaster SD27025p
           protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 51  VDCSLNRLP-CVTDQQCRDNCVISSAASELTCQDGFCNATNA 173
           V+C++  L  CV+  +CR +C  + A+S     DG C    +
Sbjct: 164 VNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCCECVGS 205


>AE014298-776|AAF46063.1|  257|Drosophila melanogaster CG12410-PA
           protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 51  VDCSLNRLP-CVTDQQCRDNCVISSAASELTCQDGFCNATNA 173
           V+C++  L  CV+  +CR +C  + A+S     DG C    +
Sbjct: 164 VNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCCECVGS 205


>AE014296-816|AAF47878.1|  116|Drosophila melanogaster CG11582-PA
           protein.
          Length = 116

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 48  GVDCSLNRLP-CVTDQQCRDNCVISSAASELTCQDGFCNATNAL 176
           G++C++  L  C +  +CR  C+ + A S     DG C     L
Sbjct: 49  GLNCTVLYLDQCTSWNKCRQTCLKTGATSYRWFHDGCCECVGEL 92


>AB210899-1|BAD95485.1|  257|Drosophila melanogaster crossveinless
           protein.
          Length = 257

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = +3

Query: 51  VDCSLNRLP-CVTDQQCRDNCVISSAASELTCQDGFCNATNA 173
           V+C++  L  CV+  +CR +C  + A+S     DG C    +
Sbjct: 164 VNCTVIYLDQCVSWNKCRTSCQTTGASSTRWFHDGCCECVGS 205


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,839,234
Number of Sequences: 53049
Number of extensions: 317504
Number of successful extensions: 918
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 695070486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)