Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d18
         (325 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical ...    31   0.19 
AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical ...    29   0.58 
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (...    28   1.3  
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (...    28   1.3  
U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical pr...    27   3.1  
Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical pr...    27   4.1  
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    27   4.1  
Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical pr...    26   7.2  
AF039041-4|ABS19460.1|  112|Caenorhabditis elegans Hypothetical ...    26   7.2  
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    25   9.5  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    25   9.5  
AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016418-7|AAK18898.1|  248|Caenorhabditis elegans Hypothetical ...    25   9.5  
AF016418-6|AAK18899.1|  248|Caenorhabditis elegans Hypothetical ...    25   9.5  

>AC006603-2|AAF39746.2|  507|Caenorhabditis elegans Hypothetical
           protein B0524.3 protein.
          Length = 507

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 15/32 (46%), Positives = 19/32 (59%)
 Frame = -1

Query: 202 IKSGACAFSKALVALQKPSWQVNSLAALEITQ 107
           +K  A    KAL +L+K SWQV+SL  L   Q
Sbjct: 192 VKGQAHRLEKALASLEKVSWQVSSLLGLPAIQ 223


>AF039041-5|AAB94187.1|  128|Caenorhabditis elegans Hypothetical
           protein W03F8.6a protein.
          Length = 128

 Score = 29.5 bits (63), Expect = 0.58
 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
 Frame = +3

Query: 36  QHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATNALLNAQAPDLI 203
           +H +G D       C    +C  D C+         C D  CN++N L+   A  LI
Sbjct: 64  RHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSNGLIYPTAGILI 120


>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform b protein.
          Length = 1069

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 24  ILRFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 158
           I   QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 32  IFVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
           (drosophila nompa:no mechanoreceptor potential a)
           protein 1, isoform a protein.
          Length = 1065

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/45 (28%), Positives = 19/45 (42%)
 Frame = +3

Query: 24  ILRFQHNRGVDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC 158
           I   QHN  V   +  +P     +C D+C  S     +  +DG C
Sbjct: 32  IFVLQHNTTVGARIRTIPTSNLAECSDHCSASLDCQGVEFKDGSC 76


>U80840-2|AAK68305.1|  336|Caenorhabditis elegans Hypothetical
           protein F08D12.7 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = -3

Query: 290 SVRAHACLRHDKISACGENVKQAQCG 213
           S +   C RH K+  C   V +A CG
Sbjct: 291 SKKEETCERHTKLKECTRTVMEASCG 316


>Z82083-4|CAB04972.1|  371|Caenorhabditis elegans Hypothetical
           protein ZK1010.6 protein.
          Length = 371

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 8   EAPPLNFTFSAQSRRRLFIEPVTVRDGS 91
           EAPP  +TF  +   RL I  + + DGS
Sbjct: 135 EAPPFRYTFCTRDTNRLAILGMYMADGS 162


>Z70310-5|CAA94369.1| 1141|Caenorhabditis elegans Hypothetical protein
            R11A8.6 protein.
          Length = 1141

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
 Frame = +3

Query: 84   TDQQCRDNCVISSAASELTCQDGFCN-ATNAL--LNAQAPDLIECDPALGLLHIFSAGGD 254
            T    +   +I +   E   ++G C   TN +  L  QA  L+  D A   +HI  +  D
Sbjct: 955  THSDAKTIVMIDTTEDESLIEEGLCREVTNRVQRLRKQAK-LVSTDTAH--VHIVVSPAD 1011

Query: 255  FVVSQACVSTYRDLVDDTGTP 317
              +++   +   D+V  TGTP
Sbjct: 1012 SQLAKVVAAKLNDIVSATGTP 1032


>Z48582-2|CAA88466.2|  228|Caenorhabditis elegans Hypothetical
           protein F27E5.4 protein.
          Length = 228

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
 Frame = +3

Query: 51  VDCSLNRLPCVTDQQCRDNCVISSAASELTCQDGFC-NATNALLN 182
           V CSL +L C  D QC     +  +  E     G C +    LLN
Sbjct: 99  VHCSLGKLACEGDLQCNSKFGVFMSECEADAARGACTDKCKTLLN 143


>Z81573-2|CAB04626.1|  294|Caenorhabditis elegans Hypothetical
           protein M02G9.3 protein.
          Length = 294

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/43 (30%), Positives = 18/43 (41%)
 Frame = +3

Query: 84  TDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIECD 212
           T   CR  C  +   S  +C  G CN+ N+ L    P    C+
Sbjct: 189 TTMTCRQTCQNTCLGSCNSCSGGGCNSNNSNLVVVTPCERSCN 231


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = -2

Query: 276 RMLETRQNLRLRRKCEASPVRDRILSSPEPVRLAKRWWRYKN-HPGRSTRLQRWKSRSCL 100
           R   +R   R RR    S  R R      PVR ++R    ++  P R  + +  +SRS L
Sbjct: 104 RRSRSRDRKRSRRSRSRSSSRSR-----SPVRESRRRSESRSPSPKRDLKREASRSRSPL 158

Query: 99  YTADPSRTVTGS 64
              D SRT +GS
Sbjct: 159 PAKDRSRTRSGS 170


>Z81568-9|CAB04599.2|  386|Caenorhabditis elegans Hypothetical
           protein K08E3.7 protein.
          Length = 386

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/73 (24%), Positives = 26/73 (35%)
 Frame = +3

Query: 69  RLPCVTDQQCRDNCVISSAASELTCQDGFCNATNALLNAQAPDLIECDPALGLLHIFSAG 248
           R+P V ++ C            L C D     T+   N Q  +   CD    +  IF  G
Sbjct: 148 RIPAVCEECCTPGLFAEFKFKCLACNDPAAALTHVRGNWQMTECCVCDGKEKV--IFDLG 205

Query: 249 GDFVVSQACVSTY 287
            + +  Q C   Y
Sbjct: 206 CNHITCQFCFRDY 218


>AF039041-4|ABS19460.1|  112|Caenorhabditis elegans Hypothetical
           protein W03F8.6b protein.
          Length = 112

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
 Frame = +3

Query: 36  QHNRGVDCSLNRLPCVTDQQC-RDNCVISSAASELTCQDGFCNATN 170
           +H +G D       C    +C  D C+         C D  CN++N
Sbjct: 64  RHKKGDDSYTITKSCGEVGKCFEDGCIGPGDEKNCCCSDNMCNSSN 109


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical
           protein F57F4.4 protein.
          Length = 2090

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 147 DGFCNATNALLNAQAPDLIECDPALGLLHIFSAG 248
           DG+C + N+++N +   +  C P +G+   F  G
Sbjct: 540 DGWCGSLNSVVNGKNATVYYCAP-VGMCRYFGLG 572


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
           interacting proteinprotein 1 protein.
          Length = 2153

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = +3

Query: 147 DGFCNATNALLNAQAPDLIECDPALGLLHIFSAG 248
           DG+C + N+++N +   +  C P +G+   F  G
Sbjct: 540 DGWCGSLNSVVNGKNATVYYCAP-VGMCRYFGLG 572


>AF063007-1|AAC16430.2|  730|Caenorhabditis elegans Hypothetical
           protein R119.1 protein.
          Length = 730

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -1

Query: 169 LVALQKPSWQVNSLAALEITQLSLHC*SVTHGNRFNEQS 53
           ++ ++KP+++V S+  L  T  SLH   + + NR  + S
Sbjct: 580 IITMKKPNFKVKSITDLLNTPYSLHQHDIGNLNRLQQFS 618


>AF016418-7|AAK18898.1|  248|Caenorhabditis elegans Hypothetical
           protein C49G7.3 protein.
          Length = 248

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 69  RLPC--VTDQQCRDNCVISSAASELTCQDGFCN 161
           RL C  +T++QCR +   +  A++     GFCN
Sbjct: 123 RLTCSTITNEQCRSSVWRTIIATDCPSACGFCN 155


>AF016418-6|AAK18899.1|  248|Caenorhabditis elegans Hypothetical
           protein C49G7.4 protein.
          Length = 248

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 69  RLPC--VTDQQCRDNCVISSAASELTCQDGFCN 161
           RL C  +T++QCR +   +  A++     GFCN
Sbjct: 123 RLTCSTITNEQCRSSVWRTIIATDCPSACGFCN 155


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,804,521
Number of Sequences: 27780
Number of extensions: 153832
Number of successful extensions: 425
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 387641448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)