Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d17
         (842 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ356012-1|ABC86955.1|  818|Homo sapiens ZNF438 transcript varia...    33   1.7  
DQ356011-1|ABC86954.1|  818|Homo sapiens ZNF438 transcript varia...    33   1.7  
BC104757-1|AAI04758.1|  828|Homo sapiens zinc finger protein 438...    33   1.7  
BC101622-1|AAI01623.1|  828|Homo sapiens ZNF438 transcript varia...    33   1.7  
AL359532-3|CAM17193.1|  828|Homo sapiens zinc finger protein 438...    33   1.7  
AL359532-2|CAI13438.1|  818|Homo sapiens zinc finger protein 438...    33   1.7  
AL359532-1|CAI13437.1|  392|Homo sapiens zinc finger protein 438...    33   1.7  
AK131357-1|BAD18510.1|  779|Homo sapiens protein ( Homo sapiens ...    33   1.7  
AF440405-1|AAP97319.1|  392|Homo sapiens unknown protein.              33   1.7  
AF428258-1|AAP97298.1|  828|Homo sapiens hypothetical protein pr...    33   1.7  
AL832804-1|CAI46888.1|  165|Homo sapiens hypothetical protein pr...    31   6.9  

>DQ356012-1|ABC86955.1|  818|Homo sapiens ZNF438 transcript variant
           3 protein.
          Length = 818

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729


>DQ356011-1|ABC86954.1|  818|Homo sapiens ZNF438 transcript variant
           2 protein.
          Length = 818

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729


>BC104757-1|AAI04758.1|  828|Homo sapiens zinc finger protein 438
           protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>BC101622-1|AAI01623.1|  828|Homo sapiens ZNF438 transcript variant
           3 protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>AL359532-3|CAM17193.1|  828|Homo sapiens zinc finger protein 438
           protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>AL359532-2|CAI13438.1|  818|Homo sapiens zinc finger protein 438
           protein.
          Length = 818

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 694 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 729


>AL359532-1|CAI13437.1|  392|Homo sapiens zinc finger protein 438
           protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303


>AK131357-1|BAD18510.1|  779|Homo sapiens protein ( Homo sapiens
           cDNA FLJ16387 fis, clone TRACH2007483, weakly  similar
           to GASTRULA ZINC FINGER PROTEIN XLCGF7.1. ).
          Length = 779

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 655 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 690


>AF440405-1|AAP97319.1|  392|Homo sapiens unknown protein.
          Length = 392

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 268 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 303


>AF428258-1|AAP97298.1|  828|Homo sapiens hypothetical protein
           protein.
          Length = 828

 Score = 32.7 bits (71), Expect = 1.7
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = +2

Query: 383 HLQRGRAKDKHLK*EEWISHNCPKLRNLRHLHDSFTEL 496
           H +RG+ +  H   EE  SH CP+L+   HLH +  E+
Sbjct: 704 HPERGKPEKVHSSSEE--SHACPRLKRQLHLHQNGVEM 739


>AL832804-1|CAI46888.1|  165|Homo sapiens hypothetical protein
           protein.
          Length = 165

 Score = 30.7 bits (66), Expect = 6.9
 Identities = 21/64 (32%), Positives = 29/64 (45%)
 Frame = +1

Query: 568 LPTQHS*TVGTQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPQPQKWEVKHR 747
           LPT  S  VGT      A      +  G   TV+P   SK  ++A   P  P+ W+ + +
Sbjct: 39  LPTSASPVVGTTGTNHHAWLSMFSRDRGL--TVLPRDVSKSWAQAILLPWPPKVWDYRCK 96

Query: 748 SAHL 759
           S HL
Sbjct: 97  SPHL 100



 Score = 30.3 bits (65), Expect = 9.1
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = +3

Query: 702 TVVPTSTSKMGSKAPKCPPQPQKWEIKHRSAHLDLHILIS 821
           TV+P   SK  ++A   P  P+ W+ + +S HL   IL++
Sbjct: 68  TVLPRDVSKSWAQAILLPWPPKVWDYRCKSPHLGCFILMA 107


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 129,224,352
Number of Sequences: 237096
Number of extensions: 3000574
Number of successful extensions: 7247
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7194
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10649685938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)