Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d17
(842 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BT015960-1|AAV36845.1| 110|Drosophila melanogaster RH46982p pro... 32 1.1
AE014296-2592|AAN11770.1| 110|Drosophila melanogaster CG32151-P... 32 1.1
AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p pro... 31 1.5
AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptio... 31 1.5
AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein. 31 1.5
AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA... 31 1.5
AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD... 31 1.5
AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB... 31 1.5
AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC... 31 1.5
AY128414-1|AAM75007.1| 311|Drosophila melanogaster GH04057p pro... 29 6.0
AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p pro... 29 6.0
AE014298-2029|AAF48366.1| 308|Drosophila melanogaster CG9400-PA... 29 6.0
>BT015960-1|AAV36845.1| 110|Drosophila melanogaster RH46982p
protein.
Length = 110
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 705 RCFTSHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 583
RCF+SH+ GG A + + L++ + C R R +CLA
Sbjct: 6 RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46
>AE014296-2592|AAN11770.1| 110|Drosophila melanogaster CG32151-PA
protein.
Length = 110
Score = 31.9 bits (69), Expect = 1.1
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = -3
Query: 705 RCFTSHF*G*GGHDGALLPVYFLSSMVRCGFGRILRPYCLA 583
RCF+SH+ GG A + + L++ + C R R +CLA
Sbjct: 6 RCFSSHYCEGGGQTNAFVSMSVLNTALECREFRRKRHFCLA 46
>AY122256-1|AAM52768.1| 1153|Drosophila melanogaster SD07343p
protein.
Length = 1153
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 125 SNSNSQPPSMPPQPQQFQSPHPSPHM 150
>AF475087-1|AAL78679.1| 1985|Drosophila melanogaster transcriptional
corepressor Atro protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AF217844-1|AAF34752.1| 1966|Drosophila melanogaster GRUNGE protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1461|AAN12008.1| 1966|Drosophila melanogaster CG6964-PA,
isoform A protein.
Length = 1966
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1460|AAS65054.1| 1985|Drosophila melanogaster CG6964-PD,
isoform D protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1459|AAF50413.2| 1985|Drosophila melanogaster CG6964-PB,
isoform B protein.
Length = 1985
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AE014296-1458|AAO41268.1| 1988|Drosophila melanogaster CG6964-PC,
isoform C protein.
Length = 1988
Score = 31.5 bits (68), Expect = 1.5
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +1
Query: 682 SKMGSKAPSCPPQPQKWEVKHRSAHL 759
S S+ PS PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
Score = 29.9 bits (64), Expect = 4.6
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 723 SKMGSKAPKCPPQPQKWEIKHRSAHL 800
S S+ P PPQPQ+++ H S H+
Sbjct: 957 SNSNSQPPSMPPQPQQFQSPHPSPHM 982
>AY128414-1|AAM75007.1| 311|Drosophila melanogaster GH04057p
protein.
Length = 311
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 589 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGSKAPSCPPQPQKWEVKHRSAH 756
T+ T PA S A + NG VP T+ GS +P+C P+P+ E+ R
Sbjct: 41 TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 100
Query: 757 LNL 765
L L
Sbjct: 101 LLL 103
>AY061177-1|AAL28725.1| 101|Drosophila melanogaster LD14555p
protein.
Length = 101
Score = 29.5 bits (63), Expect = 6.0
Identities = 22/69 (31%), Positives = 32/69 (46%)
Frame = -3
Query: 246 ICFC*EMKRSRTPRRQERPCYRILATPDREPALKL*KRSLAAPLPLFCTWRSCVRFLLKH 67
+C C K ++T +R E+ C R L T ALK K AP P C + ++ +L+
Sbjct: 26 VCACVGAKWNQTSQRVEQCCQRSLIT-----ALKK-KSPFFAPPPPLCQRKLKIQIVLQK 79
Query: 66 VWNLCNFNS 40
W F S
Sbjct: 80 FWLPWKFKS 88
>AE014298-2029|AAF48366.1| 308|Drosophila melanogaster CG9400-PA
protein.
Length = 308
Score = 29.5 bits (63), Expect = 6.0
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Frame = +1
Query: 589 TVGTQNPAESASNHTA---QKINGK*STVVP-TSTSKMGSKAPSCPPQPQKWEVKHRSAH 756
T+ T PA S A + NG VP T+ GS +P+C P+P+ E+ R
Sbjct: 38 TITTTTPASSGGYCAAALCELYNGTHLVHVPHTACGNNGSFSPACGPEPKLLEMSERRRQ 97
Query: 757 LNL 765
L L
Sbjct: 98 LLL 100
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 40,129,690
Number of Sequences: 53049
Number of extensions: 919561
Number of successful extensions: 3070
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3043
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4024321392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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