Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d17
         (842 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical...    29   3.1  
Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical pr...    29   4.1  
AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical...    28   7.2  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AC084158-11|AAK68558.1|  555|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.14 protein.
          Length = 555

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 18/59 (30%), Positives = 23/59 (38%)
 Frame = +3

Query: 588 NSRDAKSGRIRI*PYCSKNKREVKHRRAHLNLKNGK*STVVPTSTSKMGSKAPKCPPQP 764
           N +D  SG     P C KN   V       +    K S   P + +   + AP  PPQP
Sbjct: 223 NHKDCSSGSTS--PTCPKNATAVASVTTTASTSTTKTSPTKPPTPTSRPTSAPTIPPQP 279


>Z82094-3|CAB05024.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = -2

Query: 313  VYFFCYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRP 161
            V+  C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P
Sbjct: 1666 VFNTCDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEP 1721

Query: 160  RASAKTIK 137
             A+   ++
Sbjct: 1722 EATVGAVQ 1729


>Z81120-8|CAB03348.1| 2561|Caenorhabditis elegans Hypothetical protein
            T12D8.1 protein.
          Length = 2561

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 9/68 (13%)
 Frame = -2

Query: 313  VYFFCYVTEGDLVDASSDVAG------RDMLLLRDE---AVEDASPSGTAVLPNPGNPRP 161
            V+  C +TE   VD   DV G      RD+L ++DE   ++ED  P      P   +P P
Sbjct: 1666 VFNTCDITEESSVDEKKDVCGRLHEQIRDLLAIKDEVAWSMEDTPPES----PVSRSPEP 1721

Query: 160  RASAKTIK 137
             A+   ++
Sbjct: 1722 EATVGAVQ 1729


>AF016450-10|AAB65990.1|  166|Caenorhabditis elegans Hypothetical
           protein B0238.12 protein.
          Length = 166

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/61 (24%), Positives = 25/61 (40%)
 Frame = -2

Query: 304 FCYVTEGDLVDASSDVAGRDMLLLRDEAVEDASPSGTAVLPNPGNPRPRASAKTIKTIPR 125
           + Y  +  ++     V G   L  R    E+    GTA  P+  NP P  + + I  + +
Sbjct: 14  YVYAQDAQILPVGGQVGGGQRLPCRGRN-EEYKTCGTACEPSCTNPNPMCTKQCINNVCQ 72

Query: 124 C 122
           C
Sbjct: 73  C 73


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 23/49 (46%), Positives = 26/49 (53%)
 Frame = +1

Query: 577 QHS*TVGTQNPAESASNHTAQKINGK*STVVPTSTSKMGSKAPSCPPQP 723
           Q S +V TQ PA S S  TA +  G  S     S+S MGS A S  PQP
Sbjct: 714 QGSSSVTTQPPASSRS--TASQ--GSSSAQPIASSSTMGSTAGSSSPQP 758


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,612,276
Number of Sequences: 27780
Number of extensions: 469793
Number of successful extensions: 1501
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1489
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2087513582
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)