Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d16
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    34   0.024
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar...    29   1.2  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    29   1.2  
SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    29   1.2  
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S...    27   2.8  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    27   3.6  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   4.8  
SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    27   4.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.4  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   8.4  

>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 37/125 (29%), Positives = 62/125 (49%), Gaps = 1/125 (0%)
 Frame = +3

Query: 456 SKILSVLLSNSCVLRSSHS-LNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKS 632
           S + SVL S+S +  SS S  + S T +    S + +P+ ++ S S +L S  +  +  S
Sbjct: 533 SPMTSVLSSSSSIPTSSSSDFSSSITTISSGISSSSIPSTFS-SVSSILSSSTSSPSSTS 591

Query: 633 TSIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVS 812
            SI      +T+   S    +  SSS +S++   +LSSP     S  S++I S SI   S
Sbjct: 592 LSISSSSTSSTFSSASTSSPSSISSSISSSS--TILSSPT---PSTSSLMISSSSIISGS 646

Query: 813 KGLMA 827
             +++
Sbjct: 647 SSILS 651


>SPBC800.06 |brx1||ribosome biogenesis protein
           Brx1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = -1

Query: 388 DIITNFLNTKLDCRYDCADEYIKPNCIVDTYNCCNLVF 275
           D+++   ++K D + D  D   + N + + YNC N+ F
Sbjct: 63  DLVSMMPHSKKDSKLDSKDRLYQLNELAELYNCNNIFF 100


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1418

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -3

Query: 275  QKRNMNTSVDAVTKLIRLQ-NDVLDMMREVDQYLNSDTPDYTIESLNAPGKQFDFLDEML 99
            +K  M    D  T   RL+ +  +    +++ Y NSD  DYT+   ++PG  F    E +
Sbjct: 1124 EKDAMLEKTDETTSNRRLRAHHKIHYGEDLNIYDNSDDTDYTVNDRSSPGSPFPIETETI 1183

Query: 98   T 96
            +
Sbjct: 1184 S 1184


>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = -3

Query: 251 VDAVTKLIRLQNDVLDMMREVDQYL 177
           +D  + +IRL ND++  +RE++QYL
Sbjct: 254 LDETSSVIRLSNDLVLFLREMNQYL 278


>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1944

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 550 EVLRSIFVDEPFKLWLERNTHEFDNN 473
           EV+  IF    +K W E NT  F N+
Sbjct: 318 EVIDKIFNGNAYKRWTEENTSNFSND 343


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 254 SVDAVTKLIRLQNDVLDMMREVDQYLNSDTPDYTIES 144
           S+D   +L  L NDVL     V++ LNS  PD  +++
Sbjct: 391 SMDTTVRLWNLDNDVLHKDNPVEESLNS-PPDQPVDN 426


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -1

Query: 793  SDIIKTEQTDAPATSGDDNNNRKVVDANEDEYTVDGL 683
            SDI +T +   P   G  N + KV + +EDE   D L
Sbjct: 4375 SDIKQTGEDTLPTEFGSINQSEKVFELSEDEDIEDEL 4411


>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 299 VQLLQFSFQKRNMNTSVDAVTKLIRLQNDVLDMMREVDQYLNSDTP 162
           + +L++SF + +++ SV A    + L+++VLD+ +   + +  D P
Sbjct: 567 ITILRWSFPRDDVHDSVQAQQIALGLRDEVLDLEKAGIKVIQCDEP 612


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 36/138 (26%), Positives = 62/138 (44%)
 Frame = +3

Query: 456 SKILSVLLSNSCVLRSSHSLNGSSTKMLRKTSYNCLPNVYTCSYSFMLVSLLTYITKKST 635
           S + S  LS S +  +S S + S++  L  +S +   +  + S S +  S  +  +  ST
Sbjct: 228 STLTSSSLSTSSIPSTSSS-SSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTST 286

Query: 636 SIFKHL*YATYFDLSFKPSTVYSSSFASTTFRLLLSSPLVAGASVCSVLIISDSIFKVSK 815
           S       ++    +   ST+ SSS +S++F   LSS  ++ +S  S    S S   +S 
Sbjct: 287 SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFSSSPTSSS-STISS 345

Query: 816 GLMAFIKSSFCSGVVNGK 869
              +   SSF S   + K
Sbjct: 346 SSSSPSSSSFSSTTSSSK 363


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +3

Query: 186  VHFAHHVQHVVLQTNELCHRVHGRVHVSFLKTKLQQLY 299
            V+  HHVQ  +   NE+      +V ++ ++ K+Q L+
Sbjct: 934  VYAHHHVQLRIGLDNEISQNNEAKVFLNIIRAKVQNLH 971


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,532,399
Number of Sequences: 5004
Number of extensions: 74097
Number of successful extensions: 284
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)