Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d15
         (839 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    27   0.94 
AM182454-1|CAJ65692.1|  182|Anopheles gambiae globin 2 protein.        27   0.94 
AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 pro...    24   6.6  
AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    23   8.7  

>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 26.6 bits (56), Expect = 0.94
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 624 SFLKEWFLLPHYKVVSLKSESLTWGFPHVVVFDLDST 514
           +F++E+  L H  V   ++ S  +  PH  VF  DST
Sbjct: 705 AFMQEYITLGHMSVRENENSSDGYYMPHHAVFKQDST 741


>AM182454-1|CAJ65692.1|  182|Anopheles gambiae globin 2 protein.
          Length = 182

 Score = 26.6 bits (56), Expect = 0.94
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -3

Query: 807 YFQFCNDPHLCKIIENN--YNYCMQIFKAPADNMCDIRHNIKRAFKTPVL 664
           YF F +DP+   +++N   Y+  + +FKA       +   I+  FK PVL
Sbjct: 46  YFDFTDDPNAQSLVDNKSLYDQAIHVFKA-------VGALIEYGFKDPVL 88


>AF281078-1|AAF82131.1| 2051|Anopheles gambiae vitellogenin 1 protein.
          Length = 2051

 Score = 23.8 bits (49), Expect = 6.6
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -3

Query: 330  TVREERSDLVQNSH--NAIVDYNLKKRFIENKFVFDIHNHRSDNNI 199
            TV+ +     Q+SH  N+  +YN K  F E++ +  +  H  DN +
Sbjct: 1689 TVKPDYYFYGQDSHFMNSDYEYNWKNGFGEDEQITILARHGEDNQL 1734


>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 96  YDFYVKVKRCPTPVRDW 46
           ++ ++ + +CPT  RDW
Sbjct: 454 FEAHITLLKCPTDPRDW 470


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 937,738
Number of Sequences: 2352
Number of extensions: 21930
Number of successful extensions: 239
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 236
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88891965
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)