Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d15
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT012483-1|AAS93754.1|  326|Drosophila melanogaster LD45673p pro...    30   3.4  
AE014296-3442|AAF51653.2|  445|Drosophila melanogaster CG11456-P...    30   3.4  
BT024211-1|ABC86273.1|  902|Drosophila melanogaster RE30796p pro...    29   6.0  
AY118849-1|AAM50709.1|  880|Drosophila melanogaster GM15606p pro...    29   6.0  
AY051552-1|AAK92976.1|  418|Drosophila melanogaster GH20109p pro...    29   6.0  
AE014296-1259|AAF50560.2|  418|Drosophila melanogaster CG8560-PA...    29   6.0  
AE014134-1892|AAF52956.3|  880|Drosophila melanogaster CG6232-PA...    29   6.0  

>BT012483-1|AAS93754.1|  326|Drosophila melanogaster LD45673p
           protein.
          Length = 326

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 503 KRSKFKFEIRLCMTACRNCTKWVAF*SCGRMAVEIM*HTRCETPIWKAILISLSAKV-PP 327
           K   FKF+    M    +C K  +F SC    +E+    RC   +WKA  + +   V P 
Sbjct: 105 KECPFKFQDATKMELHCSCHKGGSF-SCCECGMELPNWRRCSAHLWKAHQVDVDLLVCPV 163

Query: 326 FEKN 315
           FE N
Sbjct: 164 FECN 167


>AE014296-3442|AAF51653.2|  445|Drosophila melanogaster CG11456-PA
           protein.
          Length = 445

 Score = 30.3 bits (65), Expect = 3.4
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 503 KRSKFKFEIRLCMTACRNCTKWVAF*SCGRMAVEIM*HTRCETPIWKAILISLSAKV-PP 327
           K   FKF+    M    +C K  +F SC    +E+    RC   +WKA  + +   V P 
Sbjct: 105 KECPFKFQDATKMELHCSCHKGGSF-SCCECGMELPNWRRCSAHLWKAHQVDVDLLVCPV 163

Query: 326 FEKN 315
           FE N
Sbjct: 164 FECN 167


>BT024211-1|ABC86273.1|  902|Drosophila melanogaster RE30796p
           protein.
          Length = 902

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 270 NLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPT 109
           N K+ ++EN+    I N +SD  + KS  I+    ++ + + FKS+     LP+
Sbjct: 100 NNKEEYLENETTSKISN-KSDEKVLKSSTIISLNATNPSTSTFKSVLETTTLPS 152


>AY118849-1|AAM50709.1|  880|Drosophila melanogaster GM15606p
           protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 270 NLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPT 109
           N K+ ++EN+    I N +SD  + KS  I+    ++ + + FKS+     LP+
Sbjct: 78  NNKEEYLENETASKISN-KSDEKVLKSTTIISLNATNPSTSTFKSVLETTTLPS 130


>AY051552-1|AAK92976.1|  418|Drosophila melanogaster GH20109p
           protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 405 YCHTTTRLKRNPFRAIPASCH-TQTNLEFEF 494
           Y HTTTR+ R   + I ++C+ T  N  F+F
Sbjct: 228 YSHTTTRMWRKTRKPISSACYGTDANRNFDF 258


>AE014296-1259|AAF50560.2|  418|Drosophila melanogaster CG8560-PA
           protein.
          Length = 418

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 405 YCHTTTRLKRNPFRAIPASCH-TQTNLEFEF 494
           Y HTTTR+ R   + I ++C+ T  N  F+F
Sbjct: 228 YSHTTTRMWRKTRKPISSACYGTDANRNFDF 258


>AE014134-1892|AAF52956.3|  880|Drosophila melanogaster CG6232-PA
           protein.
          Length = 880

 Score = 29.5 bits (63), Expect = 6.0
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -3

Query: 270 NLKKRFIENKFVFDIHNHRSDNNIPKSPKIVIKYLSDKNVNFFKSITLVDDLPT 109
           N K+ ++EN+    I N +SD  + KS  I+    ++ + + FKS+     LP+
Sbjct: 78  NNKEEYLENETTSKISN-KSDEKVLKSSTIISLNATNPSTSTFKSVLETTTLPS 130


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,788,546
Number of Sequences: 53049
Number of extensions: 902371
Number of successful extensions: 2536
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2526
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)