Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d14
         (839 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-4505|AAF56987.1|  156|Drosophila melanogaster CG7911-PA...    46   6e-05
X99293-1|CAA67679.1|  152|Drosophila melanogaster CRP1 protein p...    40   0.004
U59498-1|AAC47295.1|  152|Drosophila melanogaster nucleoplasmin-...    40   0.004
U59497-1|AAC47294.1|  121|Drosophila melanogaster nucleoplasmin-...    40   0.004
AY119592-1|AAM50246.1|  152|Drosophila melanogaster LD16456p pro...    40   0.004
AE014297-4506|AAF56988.1|  152|Drosophila melanogaster CG7917-PA...    40   0.004
AY061181-1|AAL28729.1|  158|Drosophila melanogaster LD14807p pro...    30   4.5  

>AE014297-4505|AAF56987.1|  156|Drosophila melanogaster CG7911-PA
           protein.
          Length = 156

 Score = 46.0 bits (104), Expect = 6e-05
 Identities = 20/30 (66%), Positives = 25/30 (83%)
 Frame = -3

Query: 837 KVGESRHVRLDIEFPDAPVTFTLVQGSGPV 748
           KVGE+R +R ++EFP+  VTF LVQGSGPV
Sbjct: 78  KVGETRSLRPNVEFPNGSVTFKLVQGSGPV 107


>X99293-1|CAA67679.1|  152|Drosophila melanogaster CRP1 protein
           protein.
          Length = 152

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 837 KVGESRHVRLDIEFPDAPVTFTLVQGSGPV 748
           K GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 68  KAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>U59498-1|AAC47295.1|  152|Drosophila melanogaster
           nucleoplasmin-like protein protein.
          Length = 152

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 837 KVGESRHVRLDIEFPDAPVTFTLVQGSGPV 748
           K GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 68  KAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>U59497-1|AAC47294.1|  121|Drosophila melanogaster
           nucleoplasmin-like protein-short protein.
          Length = 121

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 837 KVGESRHVRLDIEFPDAPVTFTLVQGSGPV 748
           K GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 37  KAGETRAVNPDVEFYESKVTFKLIKGSGPV 66


>AY119592-1|AAM50246.1|  152|Drosophila melanogaster LD16456p
           protein.
          Length = 152

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 837 KVGESRHVRLDIEFPDAPVTFTLVQGSGPV 748
           K GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 68  KAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>AE014297-4506|AAF56988.1|  152|Drosophila melanogaster CG7917-PA
           protein.
          Length = 152

 Score = 39.9 bits (89), Expect = 0.004
 Identities = 17/30 (56%), Positives = 23/30 (76%)
 Frame = -3

Query: 837 KVGESRHVRLDIEFPDAPVTFTLVQGSGPV 748
           K GE+R V  D+EF ++ VTF L++GSGPV
Sbjct: 68  KAGETRAVNPDVEFYESKVTFKLIKGSGPV 97


>AY061181-1|AAL28729.1|  158|Drosophila melanogaster LD14807p
           protein.
          Length = 158

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 647 LSSRMKIMKKVNPRAKKRKCRIMPKAKLHRPRRMPRNEQTA 525
           L  R ++     PR K+R  R+ P+ + HRP+R     +TA
Sbjct: 56  LLPRRQLPAMTAPRKKRRPRRLPPQQRRHRPKRPSLQAKTA 96


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,761,573
Number of Sequences: 53049
Number of extensions: 564289
Number of successful extensions: 1154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1072
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4003789140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)