Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d13
         (378 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...   192   4e-51
AY341235-1|AAR13799.1|  196|Anopheles gambiae transferrin-like p...    26   0.53 
AY341234-1|AAR13798.1|  196|Anopheles gambiae transferrin-like p...    26   0.53 
AY341233-1|AAR13797.1|  196|Anopheles gambiae transferrin-like p...    26   0.53 
AY341232-1|AAR13796.1|  196|Anopheles gambiae transferrin-like p...    26   0.53 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         24   1.6  
AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein p...    24   2.1  
AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding pr...    23   3.7  
AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding pr...    23   3.7  
AY341149-1|AAR13713.1|  164|Anopheles gambiae aminopeptidase N p...    22   8.6  
AY341147-1|AAR13711.1|  164|Anopheles gambiae aminopeptidase N p...    22   8.6  
AY341146-1|AAR13710.1|  164|Anopheles gambiae aminopeptidase N p...    22   8.6  
AJ973476-1|CAJ01523.1|  126|Anopheles gambiae hypothetical prote...    22   8.6  
AJ697729-1|CAG26922.1|  126|Anopheles gambiae putative sensory a...    22   8.6  

>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score =  192 bits (468), Expect = 4e-51
 Identities = 87/101 (86%), Positives = 94/101 (93%)
 Frame = -2

Query: 338 KRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQ 159
           +RRNGGR KH RGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI+DASVY  + 
Sbjct: 3   ERRNGGRCKHNRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDISDASVYSSYV 62

Query: 158 LPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
           LPKLYAKLHYCVSCAIHSKVVRNRSK+ RRIRTPP+ +FP+
Sbjct: 63  LPKLYAKLHYCVSCAIHSKVVRNRSKETRRIRTPPQRSFPK 103


>AY341235-1|AAR13799.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 314 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 183
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY341234-1|AAR13798.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 314 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 183
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY341233-1|AAR13797.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 314 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 183
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY341232-1|AAR13796.1|  196|Anopheles gambiae transferrin-like
           protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 0.53
 Identities = 11/44 (25%), Positives = 19/44 (43%)
 Frame = -2

Query: 314 KHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDIND 183
           K G+GH +  +  N   C P+   I      N+  +  + D N+
Sbjct: 50  KEGKGHDRFEKLRNAKACFPEFGGIASIAFVNVGRSRGIFDRNE 93


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 17/75 (22%), Positives = 32/75 (42%)
 Frame = -2

Query: 272  CARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVR 93
            CA  V K + + ++ IR  + +    DI  ASV+   +         Y +   +   +  
Sbjct: 808  CATTVRKGRKLYQYTIRLPINSPWKEDILIASVFNECRPDAETVAYLYHIRMELICPIPE 867

Query: 92   NRSKKDRRIRTPPES 48
             ++ + R+I  P ES
Sbjct: 868  EQNTRGRKIYAPEES 882


>AB090824-1|BAC57923.1|  298|Anopheles gambiae gag-like protein
           protein.
          Length = 298

 Score = 23.8 bits (49), Expect = 2.1
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = -2

Query: 365 GSEVRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCV 258
           G  VR      R+    + G  + KAV CTN  +C+
Sbjct: 243 GHMVRECQGTNRSSLCIRCGAANHKAVNCTNDVKCL 278


>AY146757-1|AAO12072.1|  246|Anopheles gambiae odorant-binding
           protein AgamOBP39 protein.
          Length = 246

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 18  GGRDMXPREVTLGRSTDSSVFLRSV 92
           G +DM P++ T  +  D+  F+RS+
Sbjct: 147 GAKDMQPQQSTPPQPFDAQEFIRSL 171


>AJ618928-1|CAF02007.1|  285|Anopheles gambiae odorant-binding
           protein OBPjj83a protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +3

Query: 18  GGRDMXPREVTLGRSTDSSVFLRSV 92
           G +DM P++ T  +  D+  F+RS+
Sbjct: 147 GAKDMQPQQSTPPQPFDAQEFIRSL 171


>AY341149-1|AAR13713.1|  164|Anopheles gambiae aminopeptidase N
           protein.
          Length = 164

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 HWVYRGIVNISDRRRFYDVPNH 230
           H++YRG V  SDR  +  +  H
Sbjct: 61  HFLYRGSVVTSDRTWWIPITYH 82


>AY341147-1|AAR13711.1|  164|Anopheles gambiae aminopeptidase N
           protein.
          Length = 164

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 HWVYRGIVNISDRRRFYDVPNH 230
           H++YRG V  SDR  +  +  H
Sbjct: 61  HFLYRGSVVTSDRTWWIPITYH 82


>AY341146-1|AAR13710.1|  164|Anopheles gambiae aminopeptidase N
           protein.
          Length = 164

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 165 HWVYRGIVNISDRRRFYDVPNH 230
           H++YRG V  SDR  +  +  H
Sbjct: 61  HFLYRGSVVTSDRTWWIPITYH 82


>AJ973476-1|CAJ01523.1|  126|Anopheles gambiae hypothetical protein
           protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 278 TNCARCVPKDKAIKKFVIRNIVE 210
           T+CA+C  K K+  + VI  +++
Sbjct: 70  TDCAKCSEKQKSGTEKVINYLID 92


>AJ697729-1|CAG26922.1|  126|Anopheles gambiae putative sensory
           appendage protein SAP-3 protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 278 TNCARCVPKDKAIKKFVIRNIVE 210
           T+CA+C  K K+  + VI  +++
Sbjct: 70  TDCAKCSEKQKSGTEKVINYLID 92


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 364,632
Number of Sequences: 2352
Number of extensions: 6581
Number of successful extensions: 23
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 28646721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)