Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d13
(378 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X14247-1|CAA32463.1| 114|Drosophila melanogaster ribosomal prot... 188 3e-48
X13625-1|CAB38441.1| 114|Drosophila melanogaster protein ( Dros... 188 3e-48
AY069761-1|AAL39906.1| 114|Drosophila melanogaster RE01079p pro... 188 3e-48
AE014134-2931|AAN11005.1| 114|Drosophila melanogaster CG10305-P... 188 3e-48
AE014134-2930|AAF53666.1| 114|Drosophila melanogaster CG10305-P... 188 3e-48
AE014134-2929|AAN11004.1| 114|Drosophila melanogaster CG10305-P... 188 3e-48
J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein ( D.me... 28 3.5
BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p pro... 28 3.5
AY070900-1|AAL48522.1| 463|Drosophila melanogaster RE01590p pro... 28 3.5
AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein. 28 3.5
AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,... 28 3.5
AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,... 28 3.5
AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,... 28 3.5
AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,... 28 3.5
AE014134-1736|AAF52836.1| 463|Drosophila melanogaster CG13126-P... 28 3.5
M68866-1|AAA28879.1| 1348|Drosophila melanogaster stranded at se... 28 4.6
AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p pro... 28 4.6
AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-P... 28 4.6
AE014297-574|AAN13346.1| 1348|Drosophila melanogaster CG2507-PA,... 28 4.6
AY051979-1|AAK93403.1| 1693|Drosophila melanogaster LD44801p pro... 27 6.1
AE014297-573|AAF54052.2| 1693|Drosophila melanogaster CG2507-PB,... 27 6.1
>X14247-1|CAA32463.1| 114|Drosophila melanogaster ribosomal protein
S31 protein.
Length = 114
Score = 188 bits (457), Expect = 3e-48
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = -2
Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++
Sbjct: 1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60
Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
+ LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP +FP+
Sbjct: 61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPK 104
>X13625-1|CAB38441.1| 114|Drosophila melanogaster protein (
Drosophila melanogastermRNA for putative ribosomal
protein S31. ).
Length = 114
Score = 188 bits (457), Expect = 3e-48
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = -2
Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++
Sbjct: 1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60
Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
+ LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP +FP+
Sbjct: 61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPK 104
>AY069761-1|AAL39906.1| 114|Drosophila melanogaster RE01079p
protein.
Length = 114
Score = 188 bits (457), Expect = 3e-48
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = -2
Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++
Sbjct: 1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60
Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
+ LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP +FP+
Sbjct: 61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPK 104
>AE014134-2931|AAN11005.1| 114|Drosophila melanogaster CG10305-PC,
isoform C protein.
Length = 114
Score = 188 bits (457), Expect = 3e-48
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = -2
Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++
Sbjct: 1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60
Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
+ LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP +FP+
Sbjct: 61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPK 104
>AE014134-2930|AAF53666.1| 114|Drosophila melanogaster CG10305-PB,
isoform B protein.
Length = 114
Score = 188 bits (457), Expect = 3e-48
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = -2
Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++
Sbjct: 1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60
Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
+ LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP +FP+
Sbjct: 61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPK 104
>AE014134-2929|AAN11004.1| 114|Drosophila melanogaster CG10305-PA,
isoform A protein.
Length = 114
Score = 188 bits (457), Expect = 3e-48
Identities = 85/104 (81%), Positives = 94/104 (90%)
Frame = -2
Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
MT+KRRNGGR KH RGHVK VRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDI +AS++
Sbjct: 1 MTKKRRNGGRNKHNRGHVKPVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDITEASIWD 60
Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPESNFPR 36
+ LPKLYAKLHYCVSCAIHSKVVRNRS++ RRIRTPP +FP+
Sbjct: 61 SYVLPKLYAKLHYCVSCAIHSKVVRNRSREARRIRTPPLRSFPK 104
>J03138-1|AAA28724.1| 1095|Drosophila melanogaster protein (
D.melanogaster phospholipaseC (norpA) mRNA, complete cds.
).
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>BT003293-1|AAO25053.1| 1095|Drosophila melanogaster GH28834p protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>AY070900-1|AAL48522.1| 463|Drosophila melanogaster RE01590p
protein.
Length = 463
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 260 RTARSLCISQL*RDHVHAWRVLHYGAYES 346
R R L I++ ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159
>AF181641-1|AAD55427.1| 1095|Drosophila melanogaster norpA protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>AE014298-627|AAN09121.1| 1095|Drosophila melanogaster CG3620-PB,
isoform B protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>AE014298-626|AAF45942.2| 1095|Drosophila melanogaster CG3620-PA,
isoform A protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>AE014298-625|AAX52475.1| 1095|Drosophila melanogaster CG3620-PD,
isoform D protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>AE014298-624|AAX52474.1| 1095|Drosophila melanogaster CG3620-PC,
isoform C protein.
Length = 1095
Score = 28.3 bits (60), Expect = 3.5
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHS-KVVRNRSKKDRRIRTPPESNFP 39
V+AA ++ + D + L AK+ + + + K ++ +++KDRR+R ++N
Sbjct: 977 VQAAQIKQLEDRHARDIKDLNAKQAKMSADTAKEVQNDKTLKTKNEKDRRLREKRQNNVK 1036
Query: 38 R 36
R
Sbjct: 1037 R 1037
>AE014134-1736|AAF52836.1| 463|Drosophila melanogaster CG13126-PA
protein.
Length = 463
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 260 RTARSLCISQL*RDHVHAWRVLHYGAYES 346
R R L I++ ++AW+ + YGAYES
Sbjct: 131 RRKRELEINKRLGQRIYAWKRIEYGAYES 159
>M68866-1|AAA28879.1| 1348|Drosophila melanogaster stranded at second
protein.
Length = 1348
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = -2
Query: 308 GRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHY 129
G G + T+ +P + A ++ +E + I+ S+ +F +P++Y LH
Sbjct: 910 GAGQDEETEATSTHSSIPANGANN---LQPDIEVHTLEAIDPRSIRIVFTVPQVYVNLHG 966
Query: 128 CVSCAIHSKVVRNRSKKDRRIRTPPE 51
V + + S +++I PPE
Sbjct: 967 RVELRYSNGPSNDTSTWEQQIFAPPE 992
>AY061244-1|AAL28792.1| 664|Drosophila melanogaster LD18373p
protein.
Length = 664
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 320 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 219
+A H G V V+CT C R + +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498
>AE014298-1641|AAF48061.1| 664|Drosophila melanogaster CG11696-PA
protein.
Length = 664
Score = 27.9 bits (59), Expect = 4.6
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -2
Query: 320 RAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRN 219
+A H G V V+CT C R + +++++K + R+
Sbjct: 465 KALHPDGPVAEVQCTLCGRWLRDERSLRKHLARH 498
>AE014297-574|AAN13346.1| 1348|Drosophila melanogaster CG2507-PA,
isoform A protein.
Length = 1348
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = -2
Query: 308 GRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQLPKLYAKLHY 129
G G + T+ +P + A ++ +E + I+ S+ +F +P++Y LH
Sbjct: 910 GAGQDEETEATSTHSSIPANGANN---LQPDIEVHTLEAIDPRSIRIVFTVPQVYVNLHG 966
Query: 128 CVSCAIHSKVVRNRSKKDRRIRTPPE 51
V + + S +++I PPE
Sbjct: 967 RVELRYSNGPSNDTSTWEQQIFAPPE 992
>AY051979-1|AAK93403.1| 1693|Drosophila melanogaster LD44801p protein.
Length = 1693
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPE 51
+E + I+ S+ +F +P++Y LH V + + S +++I PPE
Sbjct: 1283 IEVHTLEAIDPRSIRIVFTVPQVYVNLHGRVELRYSNGPSNDTSTWEQQIFAPPE 1337
>AE014297-573|AAF54052.2| 1693|Drosophila melanogaster CG2507-PB,
isoform B protein.
Length = 1693
Score = 27.5 bits (58), Expect = 6.1
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = -2
Query: 215 VEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPPE 51
+E + I+ S+ +F +P++Y LH V + + S +++I PPE
Sbjct: 1283 IEVHTLEAIDPRSIRIVFTVPQVYVNLHGRVELRYSNGPSNDTSTWEQQIFAPPE 1337
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,962,665
Number of Sequences: 53049
Number of extensions: 297021
Number of successful extensions: 815
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 815
length of database: 24,988,368
effective HSP length: 77
effective length of database: 20,903,595
effective search space used: 1003372560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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