Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d13
         (378 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical pr...   161   2e-40
AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical...    31   0.21 
AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical ...    31   0.21 
AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical ...    27   4.5  
AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical p...    27   5.9  
U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription f...    27   5.9  
U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein ( Caeno...    27   5.9  
AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical ...    27   5.9  
Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical pr...    26   7.8  
Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical pr...    26   7.8  

>Z92834-4|CAB07387.1|  117|Caenorhabditis elegans Hypothetical
           protein F39B2.6 protein.
          Length = 117

 Score =  161 bits (391), Expect = 2e-40
 Identities = 73/98 (74%), Positives = 80/98 (81%)
 Frame = -2

Query: 347 MTRKRRNGGRAKHGRGHVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYP 168
           MT KRRN GR K  RGHV  +RCTNC RC PKDKAIKKFV+RNIVEAAAVRDI DAS Y 
Sbjct: 1   MTFKRRNHGRNKKNRGHVAFIRCTNCGRCCPKDKAIKKFVVRNIVEAAAVRDIGDASAYT 60

Query: 167 MFQLPKLYAKLHYCVSCAIHSKVVRNRSKKDRRIRTPP 54
            + LPKLY KLHYC++CAIHSKVVRNRS++ RR R PP
Sbjct: 61  QYALPKLYHKLHYCIACAIHSKVVRNRSREARRDRNPP 98


>AL132904-23|CAC35839.2|  312|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10b protein.
          Length = 312

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -2

Query: 299 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 123
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 80  HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 139

Query: 122 SCAIHSKVV-RNRSKKDRRIRTPPES 48
            C    K++ + R  K  ++++ P S
Sbjct: 140 -CKNREKIIEKQRVSKILKVQSLPSS 164


>AL132904-7|CAC35838.1|  430|Caenorhabditis elegans Hypothetical
           protein Y111B2A.10a protein.
          Length = 430

 Score = 31.5 bits (68), Expect = 0.21
 Identities = 21/86 (24%), Positives = 41/86 (47%), Gaps = 2/86 (2%)
 Frame = -2

Query: 299 HVKAVRCTNCARCVPKDKAIKKFVIRNIVEAAAVRDINDASVYPMFQL-PKLYAKLHYCV 123
           H+K ++C NC+     +K+++  +IR+  E A   ++  A      +L P    K H   
Sbjct: 198 HLKEIQCDNCSLVFQSEKSLQSHIIRHHQEDADELEVWKAPCSICKELFPSTSVKTHEWY 257

Query: 122 SCAIHSKVV-RNRSKKDRRIRTPPES 48
            C    K++ + R  K  ++++ P S
Sbjct: 258 -CKNREKIIEKQRVSKILKVQSLPSS 282


>AL032635-6|CAE18002.1|  193|Caenorhabditis elegans Hypothetical
           protein Y51A2A.11 protein.
          Length = 193

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 356 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 255
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 83  IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 116


>AL032635-5|CAB63375.1|  260|Caenorhabditis elegans Hypothetical
           protein Y51A2A.7 protein.
          Length = 260

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -2

Query: 356 VRNMTRKRRNGGRAKHGRGHVKAVRCTNCARCVP 255
           +R +  K+ +G  A    G ++  RC N A C P
Sbjct: 150 IRALINKKVSGAHAVTWIGGLRKARCVNVAACAP 183


>Z71265-6|CAA95837.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 92  NRSKKDRRIRTPPESNFPRXHVTSTR 15
           +R+   RR++ PP S  P  H +S+R
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSSSSR 288


>Z71258-17|CAA95787.1|  399|Caenorhabditis elegans Hypothetical
           protein M05B5.5a protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 92  NRSKKDRRIRTPPESNFPRXHVTSTR 15
           +R+   RR++ PP S  P  H +S+R
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSSSSR 288


>U30248-1|AAC13874.1|  399|Caenorhabditis elegans transcription
           factor E12/47 homolog protein.
          Length = 399

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 92  NRSKKDRRIRTPPESNFPRXHVTSTR 15
           +R+   RR++ PP S  P  H +S+R
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSSSSR 288


>U13614-1|AAA21347.1|  399|Caenorhabditis elegans protein (
           Caenorhabditis elegansN2 basic-helix-loop-helix
           transcription factor E12/47homolog mRNA, complete cds.
           ).
          Length = 399

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -2

Query: 92  NRSKKDRRIRTPPESNFPRXHVTSTR 15
           +R+   RR++ PP S  P  H +S+R
Sbjct: 263 SRATSRRRVQGPPSSGIPTRHSSSSR 288


>AL110479-1|CAB60310.2|  311|Caenorhabditis elegans Hypothetical
           protein Y105C5B.1 protein.
          Length = 311

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 234 LFDSLVLWHAPRAVCASHSFNVTTSMLGASSITALTSHVSN 356
           L D LV W+  R V A     + T  L A  +  L  HVSN
Sbjct: 2   LMDGLV-WNGNREVSAGRLDTLNTFFLNALELILLIIHVSN 41


>Z81491-2|CAB04020.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.2 protein.
          Length = 181

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = -2

Query: 221 NIVEAAAVRDINDASVYPMFQLPKLYAKLHYCVSCAIHSKVVRNRSKK 78
           N++    +RD N   +   ++L  +   L YC+   +++  V NR  K
Sbjct: 82  NVITCKKLRDKNRNVIKQCYELDLVGTPLSYCIQRKLNADKVANRCVK 129


>Z75538-1|CAA99839.2| 1615|Caenorhabditis elegans Hypothetical
           protein F20G4.1 protein.
          Length = 1615

 Score = 26.2 bits (55), Expect = 7.8
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +1

Query: 1   LPLHCLVDVTXSLGKLLSGGVRI 69
           LP+   V+VT SLG L+S GV++
Sbjct: 858 LPVDKYVNVTSSLGSLMSRGVKM 880


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,849,687
Number of Sequences: 27780
Number of extensions: 139646
Number of successful extensions: 356
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 557037416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)