Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d12
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|c...    29   0.66 
SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35 ...    29   0.87 
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch...    27   2.0  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   3.5  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    26   6.1  
SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2 |Schizos...    25   8.1  

>SPAC4F10.08 |mug126||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 436

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = -3

Query: 633 QETVTVQKQKYETTLLENYDIRNRNATT 550
           QET    KQK +TT  E+Y++RNRN  T
Sbjct: 228 QETQD-DKQKPKTTQQEHYNLRNRNQAT 254


>SPBC14C8.16c |bot1||mitochondrial ribosomal protein subunit S35
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 315

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +1

Query: 76  ASYFPSYKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVT 219
           A  F +  + IE  IK L +IN + +   + +L  YNE +E + N  T
Sbjct: 154 ARKFNTSPQRIEALIK-LRRINDEFEEKKKPILHSYNEVMEKMLNACT 200


>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 867

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 142 PDLKSSPRAMLQHYNECLENLDNPVTDEHH 231
           P+L++  R  L+H  EC+E   + V+ E H
Sbjct: 771 PELQNEARRGLEHIRECIEKRRDIVSREDH 800


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 12/53 (22%), Positives = 31/53 (58%)
 Frame = +1

Query: 94  YKEIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHHLLTFGKE 252
           Y E+++   K+LNK +   K + +A ++  +  + +L++ + ++  LL+  +E
Sbjct: 186 YSELLDNYKKQLNKASESCKGNYQACIESRSTLITSLESLIEEQKKLLSEEEE 238


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +1

Query: 100 EIIEVAIKRLNKINPDLKSSPRAMLQHYNECLENLDNPVTDEHH 231
           E    A+ RL    P  + S  +     N  LEN+DN V D+ H
Sbjct: 471 EYFHGALSRLFDYAPQFERSIVSSSNLQNLTLENVDNTVWDKRH 514


>SPBC1709.02c |vas2|SPBC1734.18c|valine-tRNA ligase Vas2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 980

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 245 EKKLLQKYSSKRLNTVTPTLMPSAW 319
           EKK+LQ   S  L +  P  + SAW
Sbjct: 82  EKKVLQDLDSPALKSYNPKAVESAW 106


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,409,616
Number of Sequences: 5004
Number of extensions: 43837
Number of successful extensions: 153
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)