Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d12
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical ...    28   5.7  
Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.6  
U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical pr...    28   7.6  

>Z81546-1|CAB04449.2|  859|Caenorhabditis elegans Hypothetical
           protein F53A2.1 protein.
          Length = 859

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 3/85 (3%)
 Frame = +1

Query: 97  KEIIEVAIKRLNKINPDLK---SSPRAMLQHYNECLENLDNPVTDEHHLLTFGKEVATKI 267
           + I   A+   N  N +L     +   M + ++EC EN  NPV  +  +  +  E  +  
Sbjct: 652 RTITHQAVSNWNAKNVNLNFRFGAHNVMAEKFHECPENFKNPVNIQ-FVAPWNIEPVSAN 710

Query: 268 FIEAFEYSYTNTNAISMDKTDEFDF 342
            +E+ E     T+ I +   D+ D+
Sbjct: 711 LLESVEIKLQYTDDILLTIEDQLDY 735


>AC025724-2|AAG23378.2|  167|Caenorhabditis elegans Hypothetical
           protein Y67D8C.4 protein.
          Length = 167

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
 Frame = +1

Query: 94  YKEIIEVAIKRLNKINPDLKSSPRAM--LQHYNECLENLDNPVTDEHHLLT 240
           +KE+    ++ L+ I+    S+P+A+  L   + C E++DNP+  + H ++
Sbjct: 49  HKELGRCPLEVLHSIHNFEPSTPQAVFELDESSNCQESIDNPMKRQKHFVS 99


>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = -3

Query: 384 RSCIWQRFQCRLFNKIKFICLVHADGISVGVTVFKRFDEYF 262
           + CI+    C  FN+++ +C++  + +  G  ++ + +  F
Sbjct: 29  QKCIFSNLNCTDFNRLRRVCVLFKEYVDAGEPMYDKIEIEF 69


>U58753-6|AAC24440.1|  705|Caenorhabditis elegans Hypothetical
           protein W03B1.8 protein.
          Length = 705

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/36 (30%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = +2

Query: 548 YVVAFLFLIS*FSNKVVSYFCFCTVTVS---WFNKI 646
           ++V F+F+IS + ++++ Y  FC + ++   +FN I
Sbjct: 155 FLVPFIFIISTYFSEILQYGYFCVIAITSLVYFNVI 190


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,235,183
Number of Sequences: 27780
Number of extensions: 246331
Number of successful extensions: 628
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 628
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)