Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d08
         (854 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    23   3.1  
AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory recept...    23   3.1  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   7.1  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   7.1  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    22   7.1  

>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 186 VLEFREVFSFKKDWGTR*IDEA 121
           VL F E+ SF  DW    +D+A
Sbjct: 281 VLGFNEICSFYSDWTRVWLDDA 302


>AM292378-1|CAL23190.2|  387|Tribolium castaneum gustatory receptor
           candidate 57 protein.
          Length = 387

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/29 (51%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +3

Query: 513 GTSGVIL-ALSNQTLLIIPPAGVYGCKGA 596
           GT+ VIL AL   TLL+      YGC GA
Sbjct: 279 GTNLVILCALWITTLLLFTILLAYGCAGA 307


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 121 CLVYSTSAPIFLERKNFPEFQDFSTSDMFPLPISGVL 231
           CLV++ + P F       E  +    ++ P+P+  VL
Sbjct: 420 CLVFTLTGPFFTFCNVLMEMWNIPRENIDPIPLVVVL 456


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 69  VCYELGNFSSIQSLIILMPRLF 134
           VC  + NF   Q  I+LM +L+
Sbjct: 199 VCQTVSNFEYFQRKILLMIQLY 220


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 69  VCYELGNFSSIQSLIILMPRLF 134
           VC  + NF   Q  I+LM +L+
Sbjct: 125 VCQTVSNFEYFQRKILLMIQLY 146


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,624
Number of Sequences: 336
Number of extensions: 4894
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 23659332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)