Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d08
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    93   3e-20
SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    36   0.010
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.5  
SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase |Schizosa...    27   4.5  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    26   7.8  
SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces pomb...    26   7.8  

>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 93.5 bits (222), Expect = 3e-20
 Identities = 55/163 (33%), Positives = 80/163 (49%)
 Frame = -2

Query: 712 TATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRA 533
           TATVIF HG G +G   + W  +     +F H+K +FP AP  P T   GM    W+D  
Sbjct: 17  TATVIFLHGLGDSG---QGWSFMANTWSNFKHIKWIFPNAPSIPVTVNNGMKMPAWYDIY 73

Query: 532 NITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKL 353
           +      E  + + R   ++  LI  E   GIPSDRI++GGFS G  ++ + G  + ++L
Sbjct: 74  SFADMKREDENGILRSAGQLHELIDAELALGIPSDRILIGGFSQGCMVSLYAGLTYPKRL 133

Query: 352 AGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVP 224
           AG+   S FL   S     L         P+L  +  +D +VP
Sbjct: 134 AGIMGHSGFLPLASKFPSALSRVAKEI--PILLTYMTEDPIVP 174


>SPAC9G1.08c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 241

 Score = 35.5 bits (78), Expect = 0.010
 Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 5/132 (3%)
 Frame = -2

Query: 703 VIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFP-TAPLQPYTPAGGMM--SNVWFDRA 533
           VI  HG G +        +  V   +  ++ +  P   PL    P G  M   +V FD+ 
Sbjct: 27  VILMHGLGDSHKSFANMAK-NVPLPNTSYISLRGPYRLPLDFENPGGNWMWGEDVHFDQN 85

Query: 532 NITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRK- 356
               ++  + D  ++  T + NLI      GI S RI   GF  G  +A ++ Y+   K 
Sbjct: 86  G---ELQSEAD-FSKSFTMISNLIGNLLSYGILSSRIFFFGFGQGAMVALYSCYKLSTKY 141

Query: 355 -LAGVFAFSSFL 323
            L G+F+F   L
Sbjct: 142 QLGGIFSFGGTL 153


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 10/19 (52%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = +1

Query: 343 TPQPVF-YPICSQCEKPVH 396
           +PQ  F Y IC  CE+P+H
Sbjct: 126 SPQSNFMYAICDHCEQPIH 144


>SPBPB21E7.01c |eno102|eno1, SPBPB8B6.07c, eno1|enolase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 440

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 20/57 (35%), Positives = 24/57 (42%)
 Frame = -2

Query: 460 KTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELK 290
           KT     +PS  ++ GG   GG LAF        K      FS  L + S VY  LK
Sbjct: 142 KTTECIPVPSFNVLNGGRHAGGDLAFQEFMIMPIKAP---TFSEGLRWGSEVYHTLK 195


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = -2

Query: 430 DRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQI 251
           D+  + G SMG   A  T  +W  K+  +         NS  Y +L  + G  +  ++QI
Sbjct: 87  DKASIIGHSMGAKTAMVTALKWPDKVEKLVVVD-----NSPWYQDLPRDYGAYFRKMIQI 141


>SPBC3B9.16c |nup120||nucleoporin Nup120|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1136

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = -2

Query: 790 TSITINFNKMSKLGALHITKHSGA---KQTATVIFFHGSGSTGADIKEWVRLMVEQF 629
           +S  ++ NK+ K GAL I++   A      +T+     S  TG D  E+ RL+  ++
Sbjct: 446 SSSQVSKNKLDKFGALTISELKNAVLSSIVSTIQIEPNSDLTGYDYYEYKRLLYNEW 502


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,739,953
Number of Sequences: 5004
Number of extensions: 83611
Number of successful extensions: 267
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 266
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)