Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d08
(854 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0524 - 3845637-3845727,3845803-3845896,3846415-3846497,384... 101 1e-21
01_05_0685 + 24273331-24273569,24275429-24275465,24275739-242758... 83 2e-16
04_04_1530 - 34182235-34182336,34182436-34182543,34183627-341837... 78 1e-14
04_04_1531 - 34184899-34185030,34185130-34185240,34185344-341854... 76 3e-14
04_01_0383 + 5085697-5085724,5085816-5085927,5087249-5087285,508... 75 5e-14
05_07_0299 - 29073900-29073984,29074125-29074158,29074269-290743... 71 9e-13
04_04_1532 - 34187153-34187308,34187426-34187551,34187856-341879... 70 2e-12
08_01_0404 - 3590296-3590409,3590529-3590819,3592414-3592461,359... 33 0.29
02_05_1073 - 33895608-33895880,33896133-33896180,33896273-338965... 33 0.38
06_03_1001 + 26817231-26818246,26818341-26818525,26818614-268189... 31 1.2
01_06_0322 + 28472680-28473053,28474434-28474470,28474578-284748... 30 2.7
06_02_0360 - 15157622-15157668,15157896-15157989,15158098-151581... 29 3.6
04_04_1435 + 33585508-33586490,33586646-33586664 29 3.6
11_01_0282 + 2093451-2094668 29 4.7
07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907 29 4.7
06_03_0449 + 20907491-20910146,20910313-20910782 29 4.7
03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301 29 4.7
07_03_0481 - 18572206-18574314,18574591-18575185,18575304-185753... 29 6.2
>01_01_0524 -
3845637-3845727,3845803-3845896,3846415-3846497,
3846587-3846737,3847113-3847217,3847351-3847420,
3847551-3847587,3848155-3848257,3848441-3848480
Length = 257
Score = 101 bits (241), Expect = 1e-21
Identities = 74/252 (29%), Positives = 119/252 (47%), Gaps = 17/252 (6%)
Frame = -2
Query: 790 TSITINFNKMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVK 611
+S+ K + G H+ + GA + AT+++ HG G GA W +L+ E P++K
Sbjct: 8 SSVASGGGKRLEYGRTHVVRPKGAHK-ATIVWLHGLGDNGAS---WSQLL-ETLPLPNIK 62
Query: 610 VLFPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPS 431
+ PTAP +P GG S WFD A+++ D P+ ++ L V NL+ TE P+
Sbjct: 63 WICPTAPTRPVAVFGGFPSTAWFDVADLSEDAPDDVEGLDASAAHVANLLSTE-----PA 117
Query: 430 D-RIIVGGFSMGGALAFHT-----------GYRWDRKLAGVFAFSSFLNYNSAVYDELKN 287
D ++ VGGFSMG A A ++ G + L+ S +L ++ +++++
Sbjct: 118 DIKLGVGGFSMGAATALYSATCYAHGKYGNGNPYPVNLSVSVGLSGWLPCARSLKNKIES 177
Query: 286 NTGVTYP----PLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQ-ERLGHSLNRRG 122
+ PLL HG DD+V K GE++ LK+ G F RLGH
Sbjct: 178 SQEAAQKASSIPLLLCHGKADDVVLYKHGEKSADALKTTGFSNVVFKSYNRLGHYTVPEE 237
Query: 121 IKIIKDWIDEKL 86
+ + W+ L
Sbjct: 238 MDEVCKWLTANL 249
>01_05_0685 +
24273331-24273569,24275429-24275465,24275739-24275808,
24275978-24276082,24276205-24276355,24276454-24276536,
24276619-24276712,24276796-24276883
Length = 288
Score = 83.4 bits (197), Expect = 2e-16
Identities = 65/239 (27%), Positives = 110/239 (46%), Gaps = 17/239 (7%)
Frame = -2
Query: 751 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 572
G ++ + G Q AT+++ HG G GA W +L+ + P++K + PTAP +P
Sbjct: 53 GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLPLPNIKWICPTAPTRPVAA 107
Query: 571 AGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSD-RIIVGGFSMGG 395
GG WFD + + D + ++ L V NL+ +E PSD ++ +GGFSMG
Sbjct: 108 FGGFPCTAWFDVEDTSVDGRDDIEGLDASAAHVANLLSSE-----PSDVKLGIGGFSMGA 162
Query: 394 ALAFHT-----------GYRWDRKLAGVFAFSSFLNYNSAVYDEL-KNNTGVTYP---PL 260
A A H+ G + L+ V S +L + + ++ + T + P+
Sbjct: 163 AAALHSAACYAHGRFTNGVAYPVTLSAVIGLSGWLPCSRTLKSKMDSSQTALRRAGALPI 222
Query: 259 LQIHGNQDDLVPLKWGEETYQKLKSLGIQG-SFFVQERLGHSLNRRGIKIIKDWIDEKL 86
L HG D++V + GE++ L+ G Q +F LGH + + W+ +L
Sbjct: 223 LLSHGRADEVVTYRNGEKSADFLRGSGFQYLNFKPYNGLGHYTIPEEMDDVCKWLSSRL 281
>04_04_1530 -
34182235-34182336,34182436-34182543,34183627-34183748,
34183817-34183961,34184045-34184097,34184187-34184478
Length = 273
Score = 77.8 bits (183), Expect = 1e-14
Identities = 61/226 (26%), Positives = 99/226 (43%), Gaps = 9/226 (3%)
Frame = -2
Query: 727 SGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNV 548
+ A+ + V++ HG G +G E +R F K FP+AP P + G +
Sbjct: 46 AAARNRSFVLWLHGLGDSGP-ANEPIRNFFSAPEFRLTKWAFPSAPNSPVSCNHGAVMPS 104
Query: 547 WFD--RANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGG------- 395
WFD ++ P+ + + V +I E GIP + I V GFS GG
Sbjct: 105 WFDIHELPMSSGSPQDDSGVLKAVENVHAMIDKEVADGIPPENIFVCGFSQGGRTSALHC 164
Query: 394 ALAFHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKW 215
AL + + + L G FS +L + S+V + + T P+L HG D++V +
Sbjct: 165 ALTLASVLLYPKTLGGGAVFSGWLPFGSSVTERISPEARKT--PILWSHGIADNVVLFEA 222
Query: 214 GEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDEKLPNS 77
G+ L++ G F LGHS+++ + ++ WI L S
Sbjct: 223 GQAGPPFLQNAGFSCEFKAYPGLGHSISKEELYSLESWIKNHLKAS 268
>04_04_1531 -
34184899-34185030,34185130-34185240,34185344-34185465,
34185541-34185664,34185815-34185867,34185984-34186146
Length = 234
Score = 76.2 bits (179), Expect = 3e-14
Identities = 57/209 (27%), Positives = 85/209 (40%), Gaps = 3/209 (1%)
Frame = -2
Query: 703 VIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWF--DRAN 530
V++ HGSG TG + + V V+ FPTAP GG + WF
Sbjct: 10 VLWLHGSGQTGEESRAQVAPYFAAPELASVRFSFPTAPTSSIPCYGGEVITAWFAIPEVP 69
Query: 529 ITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLA 350
IT + + V ++ E AG I V G S GGALA + + L
Sbjct: 70 ITARTARDEKEVLKAVERVHEMLDGEVAAGTSPSNIFVCGLSQGGALAIASVLLYPMTLG 129
Query: 349 GVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQG 170
G FS L + + + + T P+L HG D +V + G L+ +G+
Sbjct: 130 GCVVFSGSLPLSKTFAESIPSEARKT--PVLWFHGMADGVVLFEAGHAGCAFLQEIGMHC 187
Query: 169 SFFV-QERLGHSLNRRGIKIIKDWIDEKL 86
F V LGH+L ++ + WI ++L
Sbjct: 188 EFKVAYPALGHTLVDEELQYFRQWIKDRL 216
>04_01_0383 +
5085697-5085724,5085816-5085927,5087249-5087285,
5087512-5087581,5087704-5087808,5088022-5088172,
5088257-5088339,5089152-5089372,5089465-5089501,
5089668-5089753
Length = 309
Score = 75.4 bits (177), Expect = 5e-14
Identities = 42/125 (33%), Positives = 66/125 (52%)
Frame = -2
Query: 751 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 572
G +I + G Q AT+++ HG G GA W +L+ + S P++K + PTA +P T
Sbjct: 20 GRTYIVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATRPVTA 74
Query: 571 AGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGA 392
GG WFD +I+ D + ++ L + NL+ +E P ++ +GGFSMG A
Sbjct: 75 FGGFPCTAWFDVEDISVDGRDDIEGLDASAAHIANLLSSEP----PDVKLGIGGFSMGAA 130
Query: 391 LAFHT 377
A H+
Sbjct: 131 AALHS 135
>05_07_0299 -
29073900-29073984,29074125-29074158,29074269-29074351,
29074457-29074607,29074853-29074957,29075099-29075168,
29075374-29075410,29076732-29076843,29076956-29076983
Length = 234
Score = 71.3 bits (167), Expect = 9e-13
Identities = 52/196 (26%), Positives = 92/196 (46%), Gaps = 15/196 (7%)
Frame = -2
Query: 751 GALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTP 572
G ++ + G Q AT+++ HG G GA W +L+ + S P++K + PTA QP T
Sbjct: 20 GRTYVVRPKGRHQ-ATIVWLHGLGDNGAS---WSQLL-DSLSLPNIKWICPTAATQPVTA 74
Query: 571 AGGMMSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGA 392
GG WFD + + D + ++ L + NL+ +E P ++ +GGFSMG A
Sbjct: 75 FGGFPCTAWFDVEDTSVDGRDDIEGLDASAAHIANLLSSEP----PDVKLGIGGFSMGAA 130
Query: 391 LA-----------FHTGYRWDRKLAGVFAFSSFLNYNSAVYDELKNN----TGVTYPPLL 257
+ F +G + L+ V + S +L + + +++++ P+L
Sbjct: 131 ASLYSAACYAHGKFASGIPYPITLSAVISLSGWLPCSRTLRGKMESSHIAARRAASLPIL 190
Query: 256 QIHGNQDDLVPLKWGE 209
HG D++V + E
Sbjct: 191 LSHGRADEVVSYRNAE 206
>04_04_1532 -
34187153-34187308,34187426-34187551,34187856-34187977,
34188058-34188181,34189671-34189821,34190506-34190720,
34191142-34191343,34191423-34191597,34191746-34192055,
34192141-34192356
Length = 598
Score = 70.1 bits (164), Expect = 2e-12
Identities = 46/146 (31%), Positives = 68/146 (46%), Gaps = 4/146 (2%)
Frame = -2
Query: 502 DSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFL 323
+ + R V +I E AG + V G S GGAL + + L G FS FL
Sbjct: 430 EDVLRAVQSVHAMIDREIAAGTNPQDVFVFGLSQGGALGIASVLLHPKTLGGCAVFSGFL 489
Query: 322 NYNSA----VYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQ 155
+NS+ V + K P+L IHG L+P+K G + + L+ LG+ F V
Sbjct: 490 PFNSSFAVRVTAQAKKLQCGLQTPVLWIHGQAGSLIPIKEGRDGIKFLRGLGMSCEFKVY 549
Query: 154 ERLGHSLNRRGIKIIKDWIDEKLPNS 77
+RLGHSL + + W+++ L S
Sbjct: 550 DRLGHSLEYYELDYCQRWVEKILHRS 575
>08_01_0404 -
3590296-3590409,3590529-3590819,3592414-3592461,
3592559-3592795,3593668-3593704,3594311-3594627
Length = 347
Score = 33.1 bits (72), Expect = 0.29
Identities = 34/116 (29%), Positives = 51/116 (43%), Gaps = 10/116 (8%)
Frame = -2
Query: 514 PEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAF 335
P + ++ A IE + L E + GI + +I+ G S+G H R R L GV
Sbjct: 119 PSEENTYADIEAVYQCL---ETEYGISQEDLILYGQSVGSGPTLHLASRLPR-LRGVVLH 174
Query: 334 SSFLNYNSAV--------YDELKNNTGV--TYPPLLQIHGNQDDLVPLKWGEETYQ 197
S+ L+ V +D KN + P+L IHG DD+V G E ++
Sbjct: 175 SAILSGLRVVCHVNFTFCFDIYKNVKKIKKVKSPVLVIHGTDDDVVNWSHGNELWK 230
>02_05_1073 -
33895608-33895880,33896133-33896180,33896273-33896509,
33897233-33897269,33898603-33898913
Length = 301
Score = 32.7 bits (71), Expect = 0.38
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 10/95 (10%)
Frame = -2
Query: 442 GIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAFSSFLNYNSAVY--------DELKN 287
GI + +I+ G S+G H R + KL GV S+ L+ +Y D KN
Sbjct: 138 GIEPEDLILYGQSVGSGPTLHLASRLE-KLRGVVLHSAILSGIRVLYPVKVTLWFDIFKN 196
Query: 286 NTGVTYP--PLLQIHGNQDDLVPLKWGEETYQKLK 188
+ P+L IHG DD+V G+ ++ K
Sbjct: 197 IDKIKQVDCPVLVIHGTADDIVDFSHGKRLWELAK 231
>06_03_1001 +
26817231-26818246,26818341-26818525,26818614-26818917,
26819956-26820041,26820141-26820298,26820420-26820496,
26820586-26820652
Length = 630
Score = 31.1 bits (67), Expect = 1.2
Identities = 25/88 (28%), Positives = 41/88 (46%)
Frame = +3
Query: 414 PTIILSLGIPASFSVFIRFFTSVSILANESSFSGTSGVILALSNQTLLIIPPAGVYGCKG 593
P II A+F++ +RF T +++A S G GV+L ++ I+ A G
Sbjct: 538 PKIISCGKTVATFAMAVRFLTGPAVIAATSIAIGLRGVLLHVA-----IVQAALPQGIVP 592
Query: 594 AVGNKTFTCGKENCSTINLTHSLISAPV 677
V K + C + ST + LI+ P+
Sbjct: 593 FVFAKEYNCHPQILSTAVIFGMLIALPI 620
>01_06_0322 +
28472680-28473053,28474434-28474470,28474578-28474814,
28474891-28474938,28475263-28475661
Length = 364
Score = 29.9 bits (64), Expect = 2.7
Identities = 33/119 (27%), Positives = 51/119 (42%), Gaps = 10/119 (8%)
Frame = -2
Query: 514 PEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFAF 335
P + ++ A IE N +K + G+ + II+ G S+G R L GV
Sbjct: 138 PTECNTYADIEAAY-NCLKEKY--GVADEDIILYGQSVGSGPTIDLASRLPN-LRGVVLH 193
Query: 334 SSFLNYNSAVY--------DELKN--NTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLK 188
S L+ +Y D KN G+ P+L IHG DD+V G++ ++ K
Sbjct: 194 SPILSGLRVLYPVKRTYWFDIYKNIDKIGLVNCPVLVIHGTSDDVVDCSHGKQLWELCK 252
>06_02_0360 -
15157622-15157668,15157896-15157989,15158098-15158189,
15158719-15158953
Length = 155
Score = 29.5 bits (63), Expect = 3.6
Identities = 28/92 (30%), Positives = 41/92 (44%), Gaps = 6/92 (6%)
Frame = -2
Query: 379 TGYRWDRKLAGVFAFSSFLNYNSA-VYDELKNNTGVTYPP----LLQI-HGNQDDLVPLK 218
TG D G+ S F +Y +A + E+KN Y +++I HG+ + LVPL
Sbjct: 51 TGKTKDMNELGIIYRSFFHDYCAAKLTREMKNKLNEKYVDDELAVMRISHGSHNGLVPLN 110
Query: 217 WGEETYQKLKSLGIQGSFFVQERLGHSLNRRG 122
+G ET G GS R + L+ G
Sbjct: 111 FG-ETRLLQSGQGFDGSMCQVSRFNYFLSYHG 141
>04_04_1435 + 33585508-33586490,33586646-33586664
Length = 333
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/29 (48%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Frame = -2
Query: 214 GEETYQKLKSLGIQGSFFV-QERLGHSLN 131
G T+ K+KSLG + SFF+ Q+R+G S +
Sbjct: 277 GSATWMKVKSLGGRRSFFIGQDRIGASFD 305
>11_01_0282 + 2093451-2094668
Length = 405
Score = 29.1 bits (62), Expect = 4.7
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = -2
Query: 490 RIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGY 371
++ EV+ ++ G+P I V G S+G ALA T Y
Sbjct: 227 QVRGEVQRIVSEYGGEGMPPLSITVTGHSLGAALAVLTAY 266
>07_01_0882 + 7342606-7342842,7343601-7344245,7344515-7344907
Length = 424
Score = 29.1 bits (62), Expect = 4.7
Identities = 27/81 (33%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Frame = +3
Query: 438 IPASFSVFIRFFTSVSI-LANESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTF 614
IP +F V + F S+ LA ESS + LS + II VY C G G +
Sbjct: 216 IPFTFGVAVFCFEGFSMTLALESSMAERRKFRWVLSQAVVGIII---VYACFGVCGYLAY 272
Query: 615 TCGKENCSTINLTHSLISAPV 677
++ T+NL +S SA V
Sbjct: 273 GEATKDIITLNLPNSWSSAAV 293
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = -2
Query: 604 FPTAPLQPYTPAGGMMSNVWFDRANITPDVPEKLDSLARI 485
F AP+ P ++ +W + NIT ++PE SL +
Sbjct: 214 FAPAPVPPAFAKLTKLTYLWMSKMNITGEIPEAFSSLTEL 253
>03_06_0224 - 32483363-32483671,32483765-32483929,32484957-32485301
Length = 272
Score = 29.1 bits (62), Expect = 4.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +3
Query: 477 SVSILANESSFSGTSGVILALSNQTLLIIPPAGVYGCKGAVGNKTFTCGKENC--STINL 650
S + + SS++ TS ++ N+ L GC G +FTC +NC ST N
Sbjct: 153 SPPVFVSNSSYTVTSFTLVFEFNKGTLQNLYWKANGCSACSGQPSFTCVDQNCAISTANC 212
Query: 651 T 653
T
Sbjct: 213 T 213
>07_03_0481 - 18572206-18574314,18574591-18575185,18575304-18575371,
18577344-18577458,18578179-18578333,18578673-18580621,
18580691-18581372,18581550-18581621,18582558-18583199,
18583301-18583402,18585011-18585100
Length = 2192
Score = 28.7 bits (61), Expect = 6.2
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = -2
Query: 523 PDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAGV 344
P + E + SL I N I+ +N+ G S I+ GFS G A FH R R G
Sbjct: 1814 PFMKESIGSLP-INRHSSNSIQ-QNEVGSSSHESILHGFSDGQAKLFHEMQR--RVKLGK 1869
Query: 343 FAFSSFLNYNSAVYDELKNNTG 278
LN+ + + D L N+G
Sbjct: 1870 LPIEMNLNH-TKLSDPLAENSG 1890
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,207,438
Number of Sequences: 37544
Number of extensions: 509365
Number of successful extensions: 1356
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1341
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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