Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d08
(854 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY102661-1|AAM27490.1| 235|Drosophila melanogaster GH11067p pro... 226 3e-59
AE014297-1212|AAF54564.1| 235|Drosophila melanogaster CG6567-PA... 226 3e-59
AY094672-1|AAM11025.1| 216|Drosophila melanogaster GH04560p pro... 121 1e-27
AE014296-1993|AAS65031.1| 216|Drosophila melanogaster CG18815-P... 121 1e-27
AE014296-1992|AAS65030.1| 216|Drosophila melanogaster CG18815-P... 121 1e-27
AE014296-1991|AAG22322.1| 216|Drosophila melanogaster CG18815-P... 121 1e-27
AE014296-2284|AAF49812.1| 289|Drosophila melanogaster CG10116-P... 30 3.5
>AY102661-1|AAM27490.1| 235|Drosophila melanogaster GH11067p
protein.
Length = 235
Score = 226 bits (553), Expect = 3e-59
Identities = 107/219 (48%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Frame = -2
Query: 736 TKHSGAKQTATVIFFHGSGSTGADIKEWVRLMV-EQFSFPHVKVLFPTAPLQPYTPAGGM 560
T ++ K TA+VIFFHGSG TG ++ EWVR ++ +PH+K+++PTAP Q YTP G
Sbjct: 7 TVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKIIYPTAPKQKYTPLDGE 66
Query: 559 MSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFH 380
+SNVWFDR ++ E S+++ V LI E +GIP +RI+VGGFSMGGALA H
Sbjct: 67 LSNVWFDRKSVNIAASESKKSMSQCYDAVNQLIDEEVASGIPLNRIVVGGFSMGGALALH 126
Query: 379 TGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETY 200
TGY R LAGVFA SSFLN S VYD L N ++P L HG +D LVP WG ET+
Sbjct: 127 TGYHLRRSLAGVFAHSSFLNRGSVVYDSLANGKDESFPELRMYHGERDTLVPKDWGLETF 186
Query: 199 QKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDEKLP 83
+ L LG++G+F H L I ++ WI EKLP
Sbjct: 187 ENLTKLGVKGTFHPLRNTLHELKTASITDLQQWIYEKLP 225
>AE014297-1212|AAF54564.1| 235|Drosophila melanogaster CG6567-PA
protein.
Length = 235
Score = 226 bits (553), Expect = 3e-59
Identities = 107/219 (48%), Positives = 138/219 (63%), Gaps = 1/219 (0%)
Frame = -2
Query: 736 TKHSGAKQTATVIFFHGSGSTGADIKEWVRLMV-EQFSFPHVKVLFPTAPLQPYTPAGGM 560
T ++ K TA+VIFFHGSG TG ++ EWVR ++ +PH+K+++PTAP Q YTP G
Sbjct: 7 TVNATGKHTASVIFFHGSGDTGPNVLEWVRFLIGRNLEYPHIKIIYPTAPKQKYTPLDGE 66
Query: 559 MSNVWFDRANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFH 380
+SNVWFDR ++ E S+++ V LI E +GIP +RI+VGGFSMGGALA H
Sbjct: 67 LSNVWFDRKSVNIAASESKKSMSQCYDAVNQLIDEEVASGIPLNRIVVGGFSMGGALALH 126
Query: 379 TGYRWDRKLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETY 200
TGY R LAGVFA SSFLN S VYD L N ++P L HG +D LVP WG ET+
Sbjct: 127 TGYHLRRSLAGVFAHSSFLNRGSVVYDSLANGKDESFPELRMYHGERDTLVPKDWGLETF 186
Query: 199 QKLKSLGIQGSFFVQERLGHSLNRRGIKIIKDWIDEKLP 83
+ L LG++G+F H L I ++ WI EKLP
Sbjct: 187 ENLTKLGVKGTFHPLRNTLHELKTASITDLQQWIYEKLP 225
>AY094672-1|AAM11025.1| 216|Drosophila melanogaster GH04560p
protein.
Length = 216
Score = 121 bits (292), Expect = 1e-27
Identities = 75/209 (35%), Positives = 106/209 (50%)
Frame = -2
Query: 718 KQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFD 539
KQTAT+IF HG G TG W + P +KV+ PTAP QP + G WFD
Sbjct: 12 KQTATLIFMHGLGDTGHG---WSSALAA-IRPPFMKVICPTAPTQPVSLNAGFRMPSWFD 67
Query: 538 RANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDR 359
+ PE + V +I+ E AGIP++RI++GGFS GGALA ++ +D+
Sbjct: 68 LKTLDIGGPEDEPGIQSARDSVHGMIQKEISAGIPANRIVLGGFSQGGALALYSALTYDQ 127
Query: 358 KLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLG 179
LAGV A S +L + N+ V P+ Q HG+ D +VP K+G+ + LKS
Sbjct: 128 PLAGVVALSCWLPLHKQFPGAKVNSDDV---PIFQAHGDYDPVVPYKFGQLSASLLKSFM 184
Query: 178 IQGSFFVQERLGHSLNRRGIKIIKDWIDE 92
+F L HS + + +KD I +
Sbjct: 185 KNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-1993|AAS65031.1| 216|Drosophila melanogaster CG18815-PC,
isoform C protein.
Length = 216
Score = 121 bits (292), Expect = 1e-27
Identities = 75/209 (35%), Positives = 106/209 (50%)
Frame = -2
Query: 718 KQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFD 539
KQTAT+IF HG G TG W + P +KV+ PTAP QP + G WFD
Sbjct: 12 KQTATLIFMHGLGDTGHG---WSSALAA-IRPPFMKVICPTAPTQPVSLNAGFRMPSWFD 67
Query: 538 RANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDR 359
+ PE + V +I+ E AGIP++RI++GGFS GGALA ++ +D+
Sbjct: 68 LKTLDIGGPEDEPGIQSARDSVHGMIQKEISAGIPANRIVLGGFSQGGALALYSALTYDQ 127
Query: 358 KLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLG 179
LAGV A S +L + N+ V P+ Q HG+ D +VP K+G+ + LKS
Sbjct: 128 PLAGVVALSCWLPLHKQFPGAKVNSDDV---PIFQAHGDYDPVVPYKFGQLSASLLKSFM 184
Query: 178 IQGSFFVQERLGHSLNRRGIKIIKDWIDE 92
+F L HS + + +KD I +
Sbjct: 185 KNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-1992|AAS65030.1| 216|Drosophila melanogaster CG18815-PB,
isoform B protein.
Length = 216
Score = 121 bits (292), Expect = 1e-27
Identities = 75/209 (35%), Positives = 106/209 (50%)
Frame = -2
Query: 718 KQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFD 539
KQTAT+IF HG G TG W + P +KV+ PTAP QP + G WFD
Sbjct: 12 KQTATLIFMHGLGDTGHG---WSSALAA-IRPPFMKVICPTAPTQPVSLNAGFRMPSWFD 67
Query: 538 RANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDR 359
+ PE + V +I+ E AGIP++RI++GGFS GGALA ++ +D+
Sbjct: 68 LKTLDIGGPEDEPGIQSARDSVHGMIQKEISAGIPANRIVLGGFSQGGALALYSALTYDQ 127
Query: 358 KLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLG 179
LAGV A S +L + N+ V P+ Q HG+ D +VP K+G+ + LKS
Sbjct: 128 PLAGVVALSCWLPLHKQFPGAKVNSDDV---PIFQAHGDYDPVVPYKFGQLSASLLKSFM 184
Query: 178 IQGSFFVQERLGHSLNRRGIKIIKDWIDE 92
+F L HS + + +KD I +
Sbjct: 185 KNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-1991|AAG22322.1| 216|Drosophila melanogaster CG18815-PA,
isoform A protein.
Length = 216
Score = 121 bits (292), Expect = 1e-27
Identities = 75/209 (35%), Positives = 106/209 (50%)
Frame = -2
Query: 718 KQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFD 539
KQTAT+IF HG G TG W + P +KV+ PTAP QP + G WFD
Sbjct: 12 KQTATLIFMHGLGDTGHG---WSSALAA-IRPPFMKVICPTAPTQPVSLNAGFRMPSWFD 67
Query: 538 RANITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDR 359
+ PE + V +I+ E AGIP++RI++GGFS GGALA ++ +D+
Sbjct: 68 LKTLDIGGPEDEPGIQSARDSVHGMIQKEISAGIPANRIVLGGFSQGGALALYSALTYDQ 127
Query: 358 KLAGVFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLG 179
LAGV A S +L + N+ V P+ Q HG+ D +VP K+G+ + LKS
Sbjct: 128 PLAGVVALSCWLPLHKQFPGAKVNSDDV---PIFQAHGDYDPVVPYKFGQLSASLLKSFM 184
Query: 178 IQGSFFVQERLGHSLNRRGIKIIKDWIDE 92
+F L HS + + +KD I +
Sbjct: 185 KNVTFKTYSGLSHSSSDDEMDDVKDIISK 213
>AE014296-2284|AAF49812.1| 289|Drosophila melanogaster CG10116-PA
protein.
Length = 289
Score = 30.3 bits (65), Expect = 3.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -2
Query: 529 ITPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALA 386
I+ D+ E D I++ +I N +P DRI+V GF+ G LA
Sbjct: 88 ISVDLSEANDETEIIDSVASLVIVLHNQFDMPLDRILVVGFAEGAHLA 135
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,836,070
Number of Sequences: 53049
Number of extensions: 861440
Number of successful extensions: 1980
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1970
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4106450400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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