Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d08
(854 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical pr... 103 2e-22
AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein ... 100 2e-21
AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein ... 100 2e-21
U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl pept... 33 0.26
Z92829-6|CAB07346.1| 214|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z81493-8|CAB04043.1| 305|Caenorhabditis elegans Hypothetical pr... 29 3.2
AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical ... 29 3.2
AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical ... 29 3.2
AF101319-1|AAC69354.2| 334|Caenorhabditis elegans Hypothetical ... 29 4.2
Z19152-9|CAC35809.1| 364|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine re... 29 5.6
U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical pr... 28 7.4
U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical pr... 28 9.7
>Z75712-3|CAB00042.2| 223|Caenorhabditis elegans Hypothetical
protein K04G2.5 protein.
Length = 223
Score = 103 bits (246), Expect = 2e-22
Identities = 63/203 (31%), Positives = 92/203 (45%)
Frame = -2
Query: 706 TVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANI 527
T+IF HG G G W + ++K + P + +P T GM WFD +
Sbjct: 21 TLIFLHGLGDQGHG---WADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGL 77
Query: 526 TPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAG 347
P+ E + R V LI E AGIP+ RI VGGFSMGGALA + G + +KL G
Sbjct: 78 DPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGG 137
Query: 346 VFAFSSFLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGS 167
+ SSF + N P+ HG D LVPL++G+ + Q +K +
Sbjct: 138 IVGLSSFFLQRTKFPGSFTANNAT---PIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKVE 194
Query: 166 FFVQERLGHSLNRRGIKIIKDWI 98
+ HS ++ +K ++
Sbjct: 195 LHTYRGMQHSSCGEEMRDVKTFL 217
>AY691524-1|AAU01163.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 100 bits (239), Expect = 2e-21
Identities = 64/191 (33%), Positives = 87/191 (45%), Gaps = 1/191 (0%)
Frame = -2
Query: 706 TVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANI 527
T+IF HG G G W + ++K + P + +P T GM WFD +
Sbjct: 21 TLIFLHGLGDQGHG---WADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGL 77
Query: 526 TPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAG 347
P+ E + R V LI E AGIP+ RI VGGFSMGGALA + G + +KL G
Sbjct: 78 DPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGG 137
Query: 346 VFAFSS-FLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQG 170
+ SS FL NN P+ HG D LVPL++G+ + Q +K +
Sbjct: 138 IVGLSSXFLQRTKFPGSFTANNA----TPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKV 193
Query: 169 SFFVQERLGHS 137
+ HS
Sbjct: 194 ELHTYRGMQHS 204
>AY691523-1|AAU01162.1| 213|Caenorhabditis elegans acyl protein
thioesterase 1 protein.
Length = 213
Score = 100 bits (239), Expect = 2e-21
Identities = 64/191 (33%), Positives = 87/191 (45%), Gaps = 1/191 (0%)
Frame = -2
Query: 706 TVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFPTAPLQPYTPAGGMMSNVWFDRANI 527
T+IF HG G G W + ++K + P + +P T GM WFD +
Sbjct: 21 TLIFLHGLGDQGHG---WADAFKTEAKHDNIKFICPHSSERPVTLNMGMRMPAWFDLFGL 77
Query: 526 TPDVPEKLDSLARIETEVKNLIKTENDAGIPSDRIIVGGFSMGGALAFHTGYRWDRKLAG 347
P+ E + R V LI E AGIP+ RI VGGFSMGGALA + G + +KL G
Sbjct: 78 DPNAQEDEQGINRATQYVHQLIDAEVAAGIPASRIAVGGFSMGGALAIYAGLTYPQKLGG 137
Query: 346 VFAFSS-FLNYNSAVYDELKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQG 170
+ SS FL NN P+ HG D LVPL++G+ + Q +K +
Sbjct: 138 IVGLSSXFLQRTKFPGSFTANNA----TPIFLGHGTDDFLVPLQFGQMSEQYIKKFNPKV 193
Query: 169 SFFVQERLGHS 137
+ HS
Sbjct: 194 ELHTYRGMQHS 204
>U13070-5|AAC46639.1| 629|Caenorhabditis elegans Dipeptidyl
peptidase four (iv)family protein 4 protein.
Length = 629
Score = 33.1 bits (72), Expect = 0.26
Identities = 15/54 (27%), Positives = 31/54 (57%)
Frame = -2
Query: 265 PLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIKIIKD 104
P+ +HG +D +VP+ Y+K+++ G+ + + + GH R G ++IK+
Sbjct: 548 PIAFLHGREDTVVPMSQSITMYEKIRASGVTTALMLFDGEGHGF-RNG-QVIKE 599
>Z92829-6|CAB07346.1| 214|Caenorhabditis elegans Hypothetical
protein F10A3.7 protein.
Length = 214
Score = 29.9 bits (64), Expect = 2.4
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 428 ITGYSSIIFSFYKILYFSFNSG**VQFFRNIWCNISSIKPNIAHHTT 568
I+ S +F YK L FSF+S V F N WC I +I +++
Sbjct: 32 ISKMSKQMFGNYKYLMFSFSSFTIVYSFVNFWCKPVVINVHITENSS 78
>Z81493-8|CAB04043.1| 305|Caenorhabditis elegans Hypothetical
protein F01D5.8 protein.
Length = 305
Score = 29.5 bits (63), Expect = 3.2
Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Frame = -2
Query: 436 PSDRIIVGGFSMGGALAFHTGYRWDRKLAGVFA---FSSFLNYNSAVYDELKNNTGVTYP 266
P +I+V G+S+G A +LAGV F+S L S+ D+ ++
Sbjct: 148 PDKKIVVMGYSIGTTAAVDLAATNPDRLAGVVLIAPFTSGLRLFSSKPDKPDTCWADSFK 207
Query: 265 PLLQI----------HGNQDDLVPLKWGEETYQKLKS 185
+I HG+ D+++PL G Y+KLK+
Sbjct: 208 SFDKINNIDTRVLICHGDVDEVIPLSHGLALYEKLKN 244
>AF003386-4|AAO38631.1| 452|Caenorhabditis elegans Hypothetical
protein F59E12.6b protein.
Length = 452
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -2
Query: 295 LKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIK 116
L N G+ PP + GN++D + +Q+ + G FF + +L + + K
Sbjct: 385 LDPNFGIGCPPKCDVVGNENDTISTH-SLPRFQRFRRRRFLGGFFKKRKL---IRKTEAK 440
Query: 115 IIKDWIDEKL 86
I W D K+
Sbjct: 441 TIVPWSDAKV 450
>AF003386-3|AAO38630.1| 499|Caenorhabditis elegans Hypothetical
protein F59E12.6a protein.
Length = 499
Score = 29.5 bits (63), Expect = 3.2
Identities = 18/70 (25%), Positives = 31/70 (44%)
Frame = -2
Query: 295 LKNNTGVTYPPLLQIHGNQDDLVPLKWGEETYQKLKSLGIQGSFFVQERLGHSLNRRGIK 116
L N G+ PP + GN++D + +Q+ + G FF + +L + + K
Sbjct: 432 LDPNFGIGCPPKCDVVGNENDTISTH-SLPRFQRFRRRRFLGGFFKKRKL---IRKTEAK 487
Query: 115 IIKDWIDEKL 86
I W D K+
Sbjct: 488 TIVPWSDAKV 497
>AF101319-1|AAC69354.2| 334|Caenorhabditis elegans Hypothetical
protein K08D9.4 protein.
Length = 334
Score = 29.1 bits (62), Expect = 4.2
Identities = 23/91 (25%), Positives = 38/91 (41%), Gaps = 3/91 (3%)
Frame = -2
Query: 766 KMSKLGALHITKHSGAKQTATVIFFHGSGSTGADIKEWVRLMVEQFSFPHVKVLFP---T 596
++ L A++ S TVI FHG+ + D K +VR +E + + + +P
Sbjct: 54 RLVDLNAVYEDSLSSGSPLGTVIGFHGTPGSHRDFK-YVRQRLEHMNIRFIGINYPGFKQ 112
Query: 595 APLQPYTPAGGMMSNVWFDRANITPDVPEKL 503
P P G N + + DVP K+
Sbjct: 113 TPAYPGQHFGNWERNSYSEALLNELDVPGKV 143
>Z19152-9|CAC35809.1| 364|Caenorhabditis elegans Hypothetical
protein B0464.9 protein.
Length = 364
Score = 28.7 bits (61), Expect = 5.6
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = -2
Query: 484 ETEVKNLIKT-ENDAGIPSDRIIVGGFSMGGALAFHT 377
ET++K++ +N G + + G SMGGALA HT
Sbjct: 137 ETQIKDIGAIFKNIFGEDDSPVCIVGHSMGGALAIHT 173
>AF025452-8|AAB70940.1| 324|Caenorhabditis elegans Serpentine
receptor, class i protein31 protein.
Length = 324
Score = 28.7 bits (61), Expect = 5.6
Identities = 11/39 (28%), Positives = 23/39 (58%)
Frame = +1
Query: 256 AARVDMLHLCYFSIHHKRLNYNLRRS*MQTPQPVFYPIC 372
+ ++++L +C+F HH + LR + + P P+ Y +C
Sbjct: 104 SGQIEVLTICFFRKHHAIM--KLRPTTDKVPYPIIYVLC 140
>U58748-5|AAP31419.1| 285|Caenorhabditis elegans Hypothetical
protein ZK180.3b protein.
Length = 285
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 IFLERKNFPEFQDFST-SDMFPLPISGVLNRPGYH 249
I++ K+ PE + FST SD+FP G+ +R H
Sbjct: 47 IYIRNKSIPELEQFSTFSDLFPKFSEGI-DRDSIH 80
>U58748-4|AAB52967.1| 522|Caenorhabditis elegans Hypothetical
protein ZK180.3a protein.
Length = 522
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 148 IFLERKNFPEFQDFST-SDMFPLPISGVLNRPGYH 249
I++ K+ PE + FST SD+FP G+ +R H
Sbjct: 195 IYIRNKSIPELEQFSTFSDLFPKFSEGI-DRDSIH 228
>Z99942-3|CAB17071.2| 585|Caenorhabditis elegans Hypothetical
protein H13N06.6 protein.
Length = 585
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = -3
Query: 207 KHIRS*KVLEFREVFSFKKDWGTR*IDEALRLLKIGSMK-SCLIHN 73
+H K ++ +++S KDWG +E +L +G+M +CL N
Sbjct: 493 RHGMDGKRMQISDMYSNVKDWGNGVDEEFYNVLNVGNMNMNCLKSN 538
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,465,964
Number of Sequences: 27780
Number of extensions: 463869
Number of successful extensions: 1408
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1405
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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