Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d06
(295 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;... 35 0.40
UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing... 34 0.69
UniRef50_Q6FB37 Cluster: Putative transcriptional regulator; n=1... 31 3.7
UniRef50_A2GAQ6 Cluster: DDE superfamily endonuclease containing... 31 4.9
UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1; ... 31 4.9
UniRef50_UPI0000DD7C16 Cluster: PREDICTED: hypothetical protein;... 31 6.4
UniRef50_A3X7U9 Cluster: Putative uncharacterized protein; n=1; ... 31 6.4
UniRef50_UPI00006CD182 Cluster: hypothetical protein TTHERM_0012... 30 8.5
UniRef50_UPI000038C572 Cluster: COG2319: FOG: WD40 repeat; n=1; ... 30 8.5
UniRef50_UPI000038295C Cluster: hypothetical protein Magn0300173... 30 8.5
UniRef50_A7IQE2 Cluster: Putative phenylacetate-CoA ligase; n=1;... 30 8.5
UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2; Osc... 30 8.5
>UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;
n=1; Mycobacterium sp. JLS|Rep: Transcriptional
regulator, TetR family - Mycobacterium sp. (strain JLS)
Length = 236
Score = 34.7 bits (76), Expect = 0.40
Identities = 22/60 (36%), Positives = 31/60 (51%)
Frame = -3
Query: 182 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGV*RKILI 3
TP TVL+D I VLKD+ TA+LS S+ I R V + S+ + R +L+
Sbjct: 155 TPKLSTVLHDAIEPVLKDS-TAVLSGSVTLDEVVDLIVRMAVSHYFMPSNDYREFRDVLV 213
>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
domain-containing protein 13B. - Takifugu rubripes
Length = 634
Score = 33.9 bits (74), Expect = 0.69
Identities = 17/38 (44%), Positives = 22/38 (57%)
Frame = -3
Query: 200 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 87
PSC F PP TVL R L++++ LL +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543
>UniRef50_Q6FB37 Cluster: Putative transcriptional regulator; n=1;
Acinetobacter sp. ADP1|Rep: Putative transcriptional
regulator - Acinetobacter sp. (strain ADP1)
Length = 466
Score = 31.5 bits (68), Expect = 3.7
Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Frame = -3
Query: 212 YVFDPSCYFSTPPFDTVLYD-----NIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSR 48
Y D C F P DTVL D N R +LK ++ ++S P E ++Q +
Sbjct: 175 YSIDLICRFLLKPGDTVLLDDPCYFNFRALLKVHQVKVISVRYTPDGPDIEAFKQAIIEH 234
Query: 47 H 45
H
Sbjct: 235 H 235
>UniRef50_A2GAQ6 Cluster: DDE superfamily endonuclease containing
protein; n=1; Trichomonas vaginalis G3|Rep: DDE
superfamily endonuclease containing protein -
Trichomonas vaginalis G3
Length = 398
Score = 31.1 bits (67), Expect = 4.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = -3
Query: 284 IADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIR 144
I D N+ LAL + + VY+F C PFD L N+R
Sbjct: 315 ILDGNMSRECPLALSILRLHRVHVYIFPSHCTHVYQPFDIGLAGNVR 361
>UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 4052
Score = 31.1 bits (67), Expect = 4.9
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -3
Query: 161 LYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGV 21
LY + + +T L + ASLPS +++ L+ H++ DSF +
Sbjct: 2664 LYHELHHAQFNLETGELVKMVLASLPSGQVHHLLIGYHHINMDSFSM 2710
>UniRef50_UPI0000DD7C16 Cluster: PREDICTED: hypothetical protein;
n=1; Homo sapiens|Rep: PREDICTED: hypothetical protein -
Homo sapiens
Length = 223
Score = 30.7 bits (66), Expect = 6.4
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 220 PESTSSIPPATFQLLPSIPYCTTTS 146
P S+ PP +F L+PS+P C+ TS
Sbjct: 75 PLRPSACPPLSFSLVPSLPPCSPTS 99
>UniRef50_A3X7U9 Cluster: Putative uncharacterized protein; n=1;
Roseobacter sp. MED193|Rep: Putative uncharacterized
protein - Roseobacter sp. MED193
Length = 246
Score = 30.7 bits (66), Expect = 6.4
Identities = 18/56 (32%), Positives = 30/56 (53%)
Frame = +3
Query: 15 TLDSKGVGRNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYGIEGRS 182
T+D + G+ +A ++ L + L ER L+ S F +K RP + +G+EG S
Sbjct: 137 TIDQRLGGQGLALLFDL-IKLHDSERRLSGRPNSSGFPRIKGRPRDDLAFGLEGYS 191
>UniRef50_UPI00006CD182 Cluster: hypothetical protein TTHERM_00128760;
n=1; Tetrahymena thermophila SB210|Rep: hypothetical
protein TTHERM_00128760 - Tetrahymena thermophila SB210
Length = 1269
Score = 30.3 bits (65), Expect = 8.5
Identities = 22/90 (24%), Positives = 45/90 (50%), Gaps = 4/90 (4%)
Frame = -3
Query: 293 KVKIADNNLVTHKELAL-KVSSIIGTRVY--VFDPSCYFSTPPFDTVLYDNIRTVLKDNK 123
KV I+D NL H +L + + ++ +F+ Y ++ + +++ +LK+
Sbjct: 801 KVLISDKNLENHSNKSLYQDKERLSLMLFNILFNSLTYCKNKSQISIFFQSMQDLLKEED 860
Query: 122 TALLSASIQASLPS-SEIYRQLVDSRHVSS 36
S SIQ LPS E+Y++ ++ + +S
Sbjct: 861 NVQNSISIQDQLPSYQELYQEQLNMQQNTS 890
>UniRef50_UPI000038C572 Cluster: COG2319: FOG: WD40 repeat; n=1;
Nostoc punctiforme PCC 73102|Rep: COG2319: FOG: WD40
repeat - Nostoc punctiforme PCC 73102
Length = 1218
Score = 30.3 bits (65), Expect = 8.5
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = -3
Query: 164 VLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 39
V++DNI T+L+ N+ + S+ I+ EI+RQ+ + RH S
Sbjct: 230 VIFDNIETILQHNEKS-KSSYIKGYEYYGEIFRQIGEIRHQS 270
>UniRef50_UPI000038295C Cluster: hypothetical protein Magn03001734;
n=1; Magnetospirillum magnetotacticum MS-1|Rep:
hypothetical protein Magn03001734 - Magnetospirillum
magnetotacticum MS-1
Length = 101
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/31 (41%), Positives = 21/31 (67%)
Frame = +3
Query: 27 KGVGRNMARIYQLAVDLGGRERSLNRCREKS 119
KG+GR ++R Q+A DLG R L R ++++
Sbjct: 22 KGLGRELSRASQVAGDLGARADELARAQQEA 52
>UniRef50_A7IQE2 Cluster: Putative phenylacetate-CoA ligase; n=1;
Xanthobacter autotrophicus Py2|Rep: Putative
phenylacetate-CoA ligase - Xanthobacter sp. (strain Py2)
Length = 416
Score = 30.3 bits (65), Expect = 8.5
Identities = 19/56 (33%), Positives = 27/56 (48%)
Frame = -3
Query: 206 FDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 39
+ +CY TP F +L D + K +T A+LPSS R L+ +R VS
Sbjct: 178 YGATCYLGTPDFLKLLLDRAAELGKSTRTLTKGFVSGAALPSS--LRALLSARGVS 231
>UniRef50_A0YMU1 Cluster: Penicillin-binding protein 1A; n=2;
Oscillatoriales|Rep: Penicillin-binding protein 1A -
Lyngbya sp. PCC 8106
Length = 855
Score = 30.3 bits (65), Expect = 8.5
Identities = 13/49 (26%), Positives = 28/49 (57%)
Frame = -3
Query: 167 TVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGV 21
TV D R++++ + ALL+ I+ + +I Q ++ ++ S ++GV
Sbjct: 283 TVFLDQERSIVRKLREALLATKIERQMSKEDILEQYLNLVYLGSGAYGV 331
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 272,493,047
Number of Sequences: 1657284
Number of extensions: 4539044
Number of successful extensions: 13662
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 13416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13659
length of database: 575,637,011
effective HSP length: 75
effective length of database: 451,340,711
effective search space used: 9929495642
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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