Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d06
(295 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0302 - 2286171-2286341,2286747-2286968 29 0.49
05_01_0493 + 4113869-4116728,4116859-4117370 28 1.5
09_04_0220 - 15813809-15815380 27 2.6
02_03_0180 - 16031366-16031445,16031950-16032022,16032148-160321... 27 2.6
11_02_0038 - 7631462-7634428,7635975-7636250 27 3.5
09_02_0400 - 8574836-8575121,8575473-8575549 26 4.6
03_05_0150 - 21283723-21284008,21284338-21284414 26 4.6
02_04_0316 - 21978330-21979397 26 6.1
01_01_0490 + 3620523-3623403,3623524-3623996 26 6.1
12_02_0786 + 23139854-23139901,23140054-23140122,23140531-231405... 25 8.0
12_02_0670 - 21700523-21700932,21701266-21701390,21701476-217016... 25 8.0
09_04_0042 - 14055885-14056142,14057508-14057774,14057859-140592... 25 8.0
02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123 25 8.0
>12_01_0302 - 2286171-2286341,2286747-2286968
Length = 130
Score = 29.5 bits (63), Expect = 0.49
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +2
Query: 14 YARLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQ 121
+ARL+R RK + ++ G + +GEKLE + +E+
Sbjct: 55 WARLERLRKGYARDVRAAGAMKVRGEKLENWREKEK 90
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -3
Query: 182 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 39
+PP+D LY + + D +L A++ S E+YR + S V+
Sbjct: 753 SPPWDVTLYQKLEIGVSDVARSLTPANVIGHGWSGEVYRASMPSSGVT 800
>09_04_0220 - 15813809-15815380
Length = 523
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 4/61 (6%)
Frame = -3
Query: 254 ELALKVSSIIGTRVYVFDPSCYFSTPPFDTV----LYDNIRTVLKDNKTALLSASIQASL 87
EL V+ ++G F P CYF + + +YD ++ L + A + S
Sbjct: 29 ELRAAVARLLGRATRAFSPYCYFDVTETEGMGTNEIYDAVQLYLSSSAAPAAGARLTLSR 88
Query: 86 P 84
P
Sbjct: 89 P 89
>02_03_0180 - 16031366-16031445,16031950-16032022,16032148-16032186,
16032434-16032715,16032790-16032948,16033034-16033390,
16033482-16033622,16033919-16034045,16034121-16034263,
16034740-16034917,16035019-16035552,16035628-16035812,
16036551-16036637,16036710-16036850,16036896-16037175,
16037944-16038020,16038326-16039138,16039292-16039801,
16039926-16040056,16040192-16040246,16040364-16040564,
16040640-16040909,16041103-16041184,16041271-16041434,
16041532-16041690,16041762-16042083,16042158-16042544,
16042811-16042999,16043233-16043317,16043458-16043753,
16043862-16043965,16044484-16044513,16044602-16044817,
16044923-16045540,16045718-16045993,16046619-16046762,
16046854-16046962,16047291-16047475,16047557-16047670,
16048348-16048479,16048929-16049249,16049424-16049891,
16054482-16054547,16054691-16054828,16054917-16055015,
16057098-16057194,16057661-16057761,16057858-16058085,
16059175-16059381,16059451-16059571,16059921-16059988,
16060148-16060213,16060396-16060509,16060949-16061300,
16063571-16063663,16063764-16063922,16064224-16064287,
16064385-16064577,16064673-16064710,16065510-16065645,
16065726-16065914,16065994-16066095,16067660-16067777,
16067861-16067964,16070338-16070346,16071428-16071475,
16071581-16071676,16072430-16072533,16073964-16074045,
16076573-16076601,16076708-16076963
Length = 4246
Score = 27.1 bits (57), Expect = 2.6
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -3
Query: 215 VYVFDPSCYFSTPPFDTVLYD-NIRTVLK-DNKTALLSASIQAS 90
V + D SC TP FDT + + N+ T K + A+L SI AS
Sbjct: 2535 VSILDSSCGMVTPIFDTTIANINLATHGKFETMNAVLICSISAS 2578
>11_02_0038 - 7631462-7634428,7635975-7636250
Length = 1080
Score = 26.6 bits (56), Expect = 3.5
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -3
Query: 194 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQ 96
CYF P + + +R + NKT +LS+ ++
Sbjct: 585 CYFDQLPLEPTTWSKLRRISIVNKTDMLSSVVE 617
>09_02_0400 - 8574836-8575121,8575473-8575549
Length = 120
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 211 TSSIPPATFQLLPSIPYC 158
T+S+PP++ QLL S P C
Sbjct: 100 TASLPPSSIQLLASPPRC 117
>03_05_0150 - 21283723-21284008,21284338-21284414
Length = 120
Score = 26.2 bits (55), Expect = 4.6
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -1
Query: 211 TSSIPPATFQLLPSIPYC 158
T+S+PP++ QLL S P C
Sbjct: 100 TASLPPSSIQLLASPPRC 117
>02_04_0316 - 21978330-21979397
Length = 355
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 2 GLRFYARLQRSRKKHGENLPTGGRSRRKGEKLE*MQREEQFCCP 133
G R A L+ + HG+ T R G+ RE +F CP
Sbjct: 152 GFRRDANLRMHMRAHGDRFKTLDALSRPGQPKPPAGREVRFSCP 195
>01_01_0490 + 3620523-3623403,3623524-3623996
Length = 1117
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = -3
Query: 179 PPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVS 39
PP+D LY + + D +L A++ S +YR + S V+
Sbjct: 765 PPWDVTLYQKLEISVGDVARSLTPANVIGQGWSGAVYRASIPSTGVA 811
>12_02_0786 +
23139854-23139901,23140054-23140122,23140531-23140544,
23140603-23140675,23140875-23140979,23141817-23142080,
23142159-23142251,23142381-23142587,23143155-23143258,
23143436-23143502,23143576-23143683,23143943-23144033,
23144123-23144193,23144421-23144549,23144659-23144766
Length = 516
Score = 25.4 bits (53), Expect = 8.0
Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 108 CIYSSF-SPFLRDLPPVGRFSPCFFRLL 28
C Y + S R PP GRFSP ++L
Sbjct: 361 CEYHGYLSDLTRTWPPCGRFSPAQVKML 388
>12_02_0670 -
21700523-21700932,21701266-21701390,21701476-21701651,
21702937-21703128
Length = 300
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/24 (33%), Positives = 17/24 (70%)
Frame = -2
Query: 132 GQQNCSSLCIYSSFSPFLRDLPPV 61
G++ C+++ Y+S+ PF + + PV
Sbjct: 76 GKEECTAVLFYASWCPFSQRMRPV 99
>09_04_0042 - 14055885-14056142,14057508-14057774,14057859-14059292,
14059378-14059539,14059642-14059768,14059869-14060200,
14060289-14061083,14061379-14061714,14061791-14062730,
14063338-14063588
Length = 1633
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -3
Query: 203 DPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQL 60
+PS + PP +D+I + + T LL AS+ S S + +R L
Sbjct: 1171 NPSYSKAIPPVRIHSFDSIFRLHQRESTGLLPASLHLSSKSVDSFRDL 1218
>02_03_0119 - 15457691-15458687,15458768-15458934,15459019-15459123
Length = 422
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -1
Query: 256 RNWPSRFLLS*APESTSSIPPATFQLLPSIPYCTTTSGR 140
R P +FL+ P S S + +LLPS P+ + G+
Sbjct: 277 RQTPHKFLVKSPPSSLGSKLKSHGKLLPSRPFTVSPPGK 315
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,539,756
Number of Sequences: 37544
Number of extensions: 132678
Number of successful extensions: 383
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 383
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 328462236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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