Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d05
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_1137 - 34372803-34372869,34373088-34373229,34373334-343734...    29   2.5  
09_04_0313 - 16594171-16594559,16595682-16595751                       29   4.3  
10_08_0234 - 16067579-16068157                                         28   5.7  
05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608           28   5.7  
03_06_0327 - 33158131-33158315,33158586-33158639,33159149-331591...    28   7.6  
01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384           28   7.6  

>02_05_1137 -
           34372803-34372869,34373088-34373229,34373334-34373403,
           34373521-34373823,34374215-34374280,34374425-34374490,
           34374584-34374682,34376153-34376310,34376951-34377039,
           34377209-34377591
          Length = 480

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 536 EFRSRGAPGTLGGDRSGRWGASVPGDHRGADGAQMAA 646
           E   + +PG  GG R GRW  S  G   G D  ++ A
Sbjct: 25  ELARQESPGVAGGRRQGRWCRSWHGRRIGRDDQEVRA 61


>09_04_0313 - 16594171-16594559,16595682-16595751
          Length = 152

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 569 GGDRSGRWGASVPGDHRGA 625
           GGD +  W  SV GDH GA
Sbjct: 29  GGDGTASWSVSVGGDHGGA 47


>10_08_0234 - 16067579-16068157
          Length = 192

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +2

Query: 569 GGDRSGRWGASVPGDHRGADGAQMAASELKG 661
           GG   G WG+S  GD  GA     +A+   G
Sbjct: 123 GGQAGGNWGSSGSGDGSGAGSGSSSANTYYG 153


>05_01_0267 + 2050854-2051682,2051864-2051921,2052518-2052608
          Length = 325

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNS 535
           AP AP  +P    PQ  +++PPK   A  DR++
Sbjct: 198 APVAPAAAPPPPPPQPKKKAPPKSSEASRDRDN 230


>03_06_0327 -
           33158131-33158315,33158586-33158639,33159149-33159180,
           33159275-33159369,33159466-33159539,33159643-33159778,
           33159874-33159937,33160017-33160079,33160160-33160299,
           33160487-33160627,33160747-33160868,33160947-33161112,
           33161194-33161313,33161580-33161651,33161787-33161843,
           33162036-33162152,33162231-33162369,33162794-33162900,
           33162972-33163081,33163172-33163305,33163397-33163546,
           33163635-33163840,33166123-33166818
          Length = 1059

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/32 (40%), Positives = 15/32 (46%), Gaps = 1/32 (3%)
 Frame = -2

Query: 639 IWAPSAPLWSPGTDAPQRPERSPPKVP-GAPL 547
           +W P      PG   PQ P   PP V  GAP+
Sbjct: 47  VWPPPGMTPRPGPPQPQYPRPGPPAVVYGAPM 78


>01_01_0770 - 5968042-5968281,5968799-5969156,5970975-5971384
          Length = 335

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 16/31 (51%), Positives = 17/31 (54%)
 Frame = +2

Query: 530 LSEFRSRGAPGTLGGDRSGRWGASVPGDHRG 622
           +S  RS GAPG     R G W ASVP D  G
Sbjct: 215 ISVLRSNGAPGLEISLRDGAW-ASVPHDGDG 244


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,669,218
Number of Sequences: 37544
Number of extensions: 331335
Number of successful extensions: 1099
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1060
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1097
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)