Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17d05
(661 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF320247-1|AAK07425.1| 894|Homo sapiens 110 kDa NFAR protein pr... 31 3.6
Z74477-2|CAI41996.1| 352|Homo sapiens testis expressed 13A prot... 31 4.8
AJ271747-1|CAC01407.1| 591|Homo sapiens double stranded RNA bin... 31 4.8
AJ271741-4|CAC01124.1| 441|Homo sapiens ILF3 protein. 31 4.8
AF202445-2|AAF82685.1| 709|Homo sapiens dsRNA binding protein N... 31 4.8
AF167570-1|AAD51099.1| 894|Homo sapiens nuclear factor associat... 31 4.8
BC114567-1|AAI14568.1| 1132|Homo sapiens nuclear protein in test... 30 6.4
BC114518-1|AAI14519.1| 1132|Homo sapiens nuclear protein in test... 30 6.4
BC048216-1|AAH48216.1| 620|Homo sapiens deltex homolog 1 (Droso... 30 6.4
BC033392-1|AAH33392.2| 613|Homo sapiens NUT protein protein. 30 6.4
AY166680-1|AAO22237.1| 1846|Homo sapiens BRD4-NUT fusion oncopro... 30 6.4
AK098568-1|BAC05337.1| 442|Homo sapiens protein ( Homo sapiens ... 30 6.4
AF482429-1|AAO39268.1| 1132|Homo sapiens testis nuclear protein ... 30 6.4
AF053700-1|AAC06246.1| 620|Homo sapiens deltex protein. 30 6.4
AK123558-1|BAC85645.1| 477|Homo sapiens protein ( Homo sapiens ... 30 8.4
>AF320247-1|AAK07425.1| 894|Homo sapiens 110 kDa NFAR protein
protein.
Length = 894
Score = 31.1 bits (67), Expect = 3.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 533 SEFRSRGAPGTLGGDRSGRWGASV-PGDHRGADGAQMAASELKG 661
S+F G+ G GG+ G GAS PG H G G S +G
Sbjct: 805 SKFNYSGSEGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 848
>Z74477-2|CAI41996.1| 352|Homo sapiens testis expressed 13A
protein.
Length = 352
Score = 30.7 bits (66), Expect = 4.8
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = -2
Query: 636 WAPSAPLWSPGTDAPQRPERS 574
W PS+P W PG P RP+RS
Sbjct: 222 WRPSSPTWRPGL-PPWRPQRS 241
>AJ271747-1|CAC01407.1| 591|Homo sapiens double stranded RNA
binding nuclear protein, ILF3 protein.
Length = 591
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 533 SEFRSRGAPGTLGGDRSGRWGASV-PGDHRGADGAQMAASELKG 661
S+F G+ G GG+ G GAS PG H G G S +G
Sbjct: 502 SKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 545
>AJ271741-4|CAC01124.1| 441|Homo sapiens ILF3 protein.
Length = 441
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 533 SEFRSRGAPGTLGGDRSGRWGASV-PGDHRGADGAQMAASELKG 661
S+F G+ G GG+ G GAS PG H G G S +G
Sbjct: 352 SKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 395
>AF202445-2|AAF82685.1| 709|Homo sapiens dsRNA binding protein
NFAR-2/MPP4 protein.
Length = 709
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 533 SEFRSRGAPGTLGGDRSGRWGASV-PGDHRGADGAQMAASELKG 661
S+F G+ G GG+ G GAS PG H G G S +G
Sbjct: 620 SKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 663
>AF167570-1|AAD51099.1| 894|Homo sapiens nuclear factor associated
with dsRNA NFAR-2 protein.
Length = 894
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +2
Query: 533 SEFRSRGAPGTLGGDRSGRWGASV-PGDHRGADGAQMAASELKG 661
S+F G+ G GG+ G GAS PG H G G S +G
Sbjct: 805 SKFNYSGSGGRSGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQG 848
>BC114567-1|AAI14568.1| 1132|Homo sapiens nuclear protein in testis
protein.
Length = 1132
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN 529
+P+ P P +D P P R PP P P + DN
Sbjct: 25 SPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDN 59
>BC114518-1|AAI14519.1| 1132|Homo sapiens nuclear protein in testis
protein.
Length = 1132
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN 529
+P+ P P +D P P R PP P P + DN
Sbjct: 25 SPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDN 59
>BC048216-1|AAH48216.1| 620|Homo sapiens deltex homolog 1
(Drosophila) protein.
Length = 620
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 645 AAIWAPSAPLWSPGTDAPQRPERSPPKVPGAP 550
AA+WA AP P AP P +PP+ PGAP
Sbjct: 256 AALWA--APAAGPAEPAP--PPGAPPRSPGAP 283
>BC033392-1|AAH33392.2| 613|Homo sapiens NUT protein protein.
Length = 613
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN 529
+P+ P P +D P P R PP P P + DN
Sbjct: 25 SPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDN 59
>AY166680-1|AAO22237.1| 1846|Homo sapiens BRD4-NUT fusion
oncoprotein protein.
Length = 1846
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN 529
+P+ P P +D P P R PP P P + DN
Sbjct: 739 SPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDN 773
>AK098568-1|BAC05337.1| 442|Homo sapiens protein ( Homo sapiens
cDNA FLJ25702 fis, clone TST04740. ).
Length = 442
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN 529
+P+ P P +D P P R PP P P + DN
Sbjct: 25 SPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDN 59
>AF482429-1|AAO39268.1| 1132|Homo sapiens testis nuclear protein
protein.
Length = 1132
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 633 APSAPLWSPGTDAPQRPERSPPKVPGAPLDRNSDN 529
+P+ P P +D P P R PP P P + DN
Sbjct: 25 SPALPFLPPTSDPPDHPPREPPPQPIMPSVFSPDN 59
>AF053700-1|AAC06246.1| 620|Homo sapiens deltex protein.
Length = 620
Score = 30.3 bits (65), Expect = 6.4
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = -2
Query: 645 AAIWAPSAPLWSPGTDAPQRPERSPPKVPGAP 550
AA+WA AP P AP P +PP+ PGAP
Sbjct: 256 AALWA--APAAGPAEPAP--PPGAPPRSPGAP 283
>AK123558-1|BAC85645.1| 477|Homo sapiens protein ( Homo sapiens
cDNA FLJ41564 fis, clone CTONG1000508. ).
Length = 477
Score = 29.9 bits (64), Expect = 8.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -2
Query: 618 LWSPGTDAPQRPERSPPKVPGAPLD 544
LW D+ RPE PP P AP D
Sbjct: 213 LWKQSQDSRPRPEPCPPPEPSAPQD 237
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,188,766
Number of Sequences: 237096
Number of extensions: 1823780
Number of successful extensions: 5476
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5465
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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