Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d05
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical pr...    29   3.9  
AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical ...    29   3.9  
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical...    28   5.1  
AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical...    28   6.8  
AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical...    28   6.8  

>Z11126-7|CAO82061.1|  522|Caenorhabditis elegans Hypothetical
           protein ZK643.3b protein.
          Length = 522

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 110 CSLTIS*DITYLRLIVLNWEM*QALYLCAIVH 15
           C L  S  + YLRL    W + +A+YL  ++H
Sbjct: 298 CRLLFSIQLRYLRLTNFTWMLAEAVYLWRLLH 329


>Z11126-6|CAA77471.2|  480|Caenorhabditis elegans Hypothetical
           protein ZK643.3a protein.
          Length = 480

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -3

Query: 110 CSLTIS*DITYLRLIVLNWEM*QALYLCAIVH 15
           C L  S  + YLRL    W + +A+YL  ++H
Sbjct: 298 CRLLFSIQLRYLRLTNFTWMLAEAVYLWRLLH 329


>AC024835-2|AAK68537.1|  684|Caenorhabditis elegans Hypothetical
           protein Y57E12B.3 protein.
          Length = 684

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
 Frame = -2

Query: 657 FSSLAAIWA--PSAPLWSPGTDAPQRPERSP--PKVPGAP 550
           F+SLA +W      P WSP  D+P +P ++   P  P  P
Sbjct: 201 FTSLAPLWTLPTQPPAWSPMLDSPIKPIQNSMFPTFPTMP 240


>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
           protein C01G8.9a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -2

Query: 630 PSAPLWSPGTDAPQRPERSPPKVPGAP-LDRN 538
           P  P   PG  AP  P   PP+ PG P +D N
Sbjct: 448 PGPPGAYPGNGAPGGPPGGPPQFPGHPGMDPN 479


>AC025716-19|AAK39602.2|  549|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.17 protein.
          Length = 549

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 630 PSAPLWSPGTDAPQRPERSPPKVPGAP 550
           PS  + S G   P+RP R P   PG+P
Sbjct: 184 PSPAVDSDGGSYPKRPRRGPKTPPGSP 210


>AL132876-37|CAN99761.1| 1156|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23b protein.
          Length = 1156

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 572 HLKSPALLWTEIPTTKRNAVKNNGTLEQIKILYLLDSRRDLRPGFRR 432
           HL   + +W  +  T   A +NN  +    ++   D +R +R G R+
Sbjct: 285 HLNVESSMWIHVKNTVGEAAENNNAVSGEDLISEWDWKRRIRDGLRK 331


>AL132876-36|CAD21670.3| 1138|Caenorhabditis elegans Hypothetical
           protein Y105E8A.23a protein.
          Length = 1138

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = -3

Query: 572 HLKSPALLWTEIPTTKRNAVKNNGTLEQIKILYLLDSRRDLRPGFRR 432
           HL   + +W  +  T   A +NN  +    ++   D +R +R G R+
Sbjct: 285 HLNVESSMWIHVKNTVGEAAENNNAVSGEDLISEWDWKRRIRDGLRK 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,368,696
Number of Sequences: 27780
Number of extensions: 290329
Number of successful extensions: 808
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)