Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17d05
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    24   1.1  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    24   1.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   2.6  
AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding prote...    22   4.5  
AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-bind...    22   4.5  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   7.9  

>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 567 KVPGAPLDRNSDN*TQRCEKQRNSR 493
           KVP A  DR  D+  QR  K+ N+R
Sbjct: 174 KVPSAADDRMFDDIIQRLSKKANAR 198


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 567 KVPGAPLDRNSDN*TQRCEKQRNSR 493
           KVP A  DR  D+  QR  K+ N+R
Sbjct: 264 KVPSAADDRMFDDIIQRLSKKANAR 288


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 2.6
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 621  PLWSPGTDAPQRPERSPP-KVPGAPLDRNSDN 529
            P  S G   P+RPER P   +  +P DR  ++
Sbjct: 1357 PSASGGRPVPERPERVPTVDLSPSPSDRGRND 1388


>AF393493-1|AAL60418.1|  142|Apis mellifera odorant binding protein
           ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 16  CTMAHKYKACYISQL 60
           C + +KY  CYI +L
Sbjct: 126 CNIGNKYTDCYIEKL 140


>AF166497-1|AAD51945.1|  142|Apis mellifera putative odorant-binding
           protein ASP2 protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +1

Query: 16  CTMAHKYKACYISQL 60
           C + +KY  CYI +L
Sbjct: 126 CNIGNKYTDCYIEKL 140


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 264 GALVTVRVAARPCHVNHS 211
           GALVT+ V    C VN S
Sbjct: 181 GALVTLSVQLLSCEVNGS 198


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,350
Number of Sequences: 438
Number of extensions: 3694
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)