Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c17
(915 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 293 3e-80
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple... 33 0.043
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 29 1.2
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 28 2.1
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha... 27 3.7
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 3.7
SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe... 26 8.6
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 293 bits (718), Expect = 3e-80
Identities = 142/242 (58%), Positives = 181/242 (74%), Gaps = 1/242 (0%)
Frame = -1
Query: 903 NYLHYSLYDQADKLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKA 724
NY+ ++LYDQAD+LVSK+ F NASNN R+ YYLGRI+A +L+Y+ AH+HLV A+RKA
Sbjct: 219 NYIQFNLYDQADRLVSKTSFLTNASNNLAIRYQYYLGRIRAIQLDYTTAHEHLVSAIRKA 278
Query: 723 PQTA-AVGFRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRF 547
P T AV F + V KL IVV+LL+G+IPER IFRQ L K L PY +++QAVR+G+L F
Sbjct: 279 PNTVYAVQFLEAVYKLHIVVQLLMGEIPERRIFRQKSLEKTLVPYLRISQAVRIGDLCAF 338
Query: 546 GEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAE 367
+ L Y +FR D +TLI RLR VIKT +R I LSYSRIS +D+ KLGLDS E AE
Sbjct: 339 TDALSKYEAEFRFDGLYTLICRLRHTVIKTGLRMISLSYSRISLRDVCIKLGLDSEESAE 398
Query: 366 FIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMR 187
+IVAK IRDGVI+A++D +M++ E+ DIY T +PQ AFH+RI FCL LHN S+K+MR
Sbjct: 399 YIVAKGIRDGVIDASIDHSNAFMASNEAMDIYSTEQPQQAFHERIQFCLALHNDSIKSMR 458
Query: 186 YP 181
YP
Sbjct: 459 YP 460
>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
subunit |Schizosaccharomyces pombe|chr 2|||Manual
Length = 442
Score = 33.5 bits (73), Expect = 0.043
Identities = 28/112 (25%), Positives = 50/112 (44%)
Frame = -1
Query: 864 LVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQ 685
++S A+ E F YYLGR + + A HL+ + + P R ++
Sbjct: 208 VISSGADISRATMAELVTFRYYLGRCHLYQRKIHQAKDHLLFSFLQCPDECYHQKRLSLI 267
Query: 684 KLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLEN 529
L + L+LG P + + + L A P L +A++ G+++ F LE+
Sbjct: 268 YLTTCL-LILGKSPTKGLLEKYKLTAAFEP---LIKALKSGDIKSFRLSLED 315
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 28.7 bits (61), Expect = 1.2
Identities = 27/118 (22%), Positives = 48/118 (40%), Gaps = 5/118 (4%)
Frame = -1
Query: 846 FPENASNNEWARFLYYLGRIK-AARLEYSDAHKHLVQALRKAPQT-AAVGFRQTVQKLAI 673
F NNE F++Y+G I + Y +HL + + + +AV + +
Sbjct: 597 FQATDENNEPGNFIFYIGIIDLLTKYSYVKRVEHLWKGINHSDSVISAVPPAEYASRFYK 656
Query: 672 VVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQ---RFGEVLENYGPQFRN 508
VE + P ++ + PL+ Q+V GN++ + G + N P RN
Sbjct: 657 FVESSIK--PTLLVLKPFPLKPQDGQRVNKQQSVNAGNVRTNNKHGSLNNNTAPSSRN 712
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 27.9 bits (59), Expect = 2.1
Identities = 24/97 (24%), Positives = 44/97 (45%), Gaps = 4/97 (4%)
Frame = -1
Query: 810 FLYYLGRIKAARLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLA---IVVELLLG-DIP 643
F YYLG + Y +A L A + G+ + ++ + I +L+ +P
Sbjct: 234 FHYYLGIVAFLNQNYKNASAELEIAFSLCHK----GYNRNLELILSYWIPTRILVNHQLP 289
Query: 642 ERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFGEVLE 532
+ + + P + Y LT+A++ GNL FG+ L+
Sbjct: 290 TKNLLSKFP--NLASVYIPLTRALKSGNLGEFGKCLQ 324
>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 720
Score = 27.1 bits (57), Expect = 3.7
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 725 AFLKACTRCLCASLYSNLAAFILPR*YRNLAHSLLL 832
A L CT L+S L F +P Y + H LLL
Sbjct: 310 ALLVYCTEEQAYFLFSQLCEFYIPGYYAKIIHGLLL 345
>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 578
Score = 27.1 bits (57), Expect = 3.7
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 342 DGVIEATLDPVKGYMSNKESSDIYCTREPQLAFH 241
D V E L+ V G+ ++SSD CT P H
Sbjct: 382 DYVNELQLEIVPGFSHGRDSSDTSCTESPPEPSH 415
>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 410
Score = 25.8 bits (54), Expect = 8.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +3
Query: 267 YNKYLSFLYYSCSPLQG 317
YN Y +L SC+P+QG
Sbjct: 349 YNDYQLYLLLSCAPIQG 365
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,594,432
Number of Sequences: 5004
Number of extensions: 71858
Number of successful extensions: 203
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 464508080
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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