Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c17
(915 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0131 - 21037698-21038210,21038293-21038532,21038679-210387... 293 1e-79
08_02_1505 - 27581466-27581978,27582054-27582293,27582527-275826... 291 7e-79
08_01_0130 + 1040696-1041049,1042135-1042275,1042422-1042673,104... 53 3e-07
03_03_0227 - 15596445-15596522,15596635-15596767,15596861-155969... 34 0.18
03_02_0984 + 12947444-12947530,12949071-12949127,12949833-129499... 28 9.0
>09_06_0131 - 21037698-21038210,21038293-21038532,21038679-21038789,
21038872-21038926,21039074-21039210,21039284-21039421,
21040304-21040494,21040625-21040703
Length = 487
Score = 293 bits (720), Expect = 1e-79
Identities = 151/280 (53%), Positives = 196/280 (70%), Gaps = 3/280 (1%)
Frame = -1
Query: 903 NYLHYSLYDQADKLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKA 724
NYLHY+LYDQA+KL SK+ E SN ++ R+L+YLG+I+ +LEY+DA + L+QA RKA
Sbjct: 210 NYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 269
Query: 723 PQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFG 544
P TA GFR K AI+V LLLG+IPER +F Q ++ ALAPYF+LT AVR+G+L+ F
Sbjct: 270 PTTAR-GFRVQCNKWAIIVRLLLGEIPERTVFMQKGMKAALAPYFELTNAVRVGDLELFR 328
Query: 543 EVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDS---AED 373
V E + F D T LI+RLR NVI+T +R+I +SYSRIS DIA+KL LDS D
Sbjct: 329 AVAEKFASTFSADRTRNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDSENPVAD 388
Query: 372 AEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKA 193
AE IVAKAIRDG I+AT+D G+M +KE+ D+Y T EPQ+AF+ RI+FCL++HN++VKA
Sbjct: 389 AESIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQIAFNSRIAFCLNMHNEAVKA 448
Query: 192 MRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDGF 73
+R+PP S+ K AK MAEEDDD F
Sbjct: 449 LRFPPNSH-KEKESAEKRRERLQQEEELAKHMAEEDDDDF 487
>08_02_1505 - 27581466-27581978,27582054-27582293,27582527-27582637,
27582732-27582786,27582880-27583016,27583092-27583229,
27583293-27583355,27584379-27584569,27584657-27584732
Length = 507
Score = 291 bits (713), Expect = 7e-79
Identities = 150/280 (53%), Positives = 196/280 (70%), Gaps = 3/280 (1%)
Frame = -1
Query: 903 NYLHYSLYDQADKLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKA 724
NYLHY+LYDQA+KL SK+ E SN ++ R+L+YLG+I+ +LEY+DA + L+QA RKA
Sbjct: 230 NYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKA 289
Query: 723 PQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFG 544
P TA GFR K AI+V LLLG+IPER +F Q +++AL PYF+LT AVR+G+L+ F
Sbjct: 290 PITAR-GFRIQCNKWAIIVRLLLGEIPERTVFMQKGMKEALTPYFELTNAVRIGDLELFR 348
Query: 543 EVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDS---AED 373
V + + F D T LI+RLR NVI+T +R+I +SYSRIS DIA+KL LDS D
Sbjct: 349 AVADKFVSTFSADRTRNLIVRLRHNVIRTGLRNISISYSRISLADIAKKLRLDSDNPVAD 408
Query: 372 AEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKA 193
AE IVAKAIRDG I+AT+D G+M +KE+ D+Y T EPQ+AF+ RI+FCL++HN++VKA
Sbjct: 409 AESIVAKAIRDGAIDATIDHANGWMVSKETGDVYSTNEPQIAFNSRIAFCLNMHNEAVKA 468
Query: 192 MRYPPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDGF 73
MR+PP S+ K AK MAEEDDD F
Sbjct: 469 MRFPPNSH-KEKESAEKRRERLQQEEELAKHMAEEDDDDF 507
>08_01_0130 +
1040696-1041049,1042135-1042275,1042422-1042673,
1043797-1043904,1044289-1044593,1044720-1044841,
1044979-1045225,1045308-1045365,1045414-1045530,
1045718-1045753,1046492-1046554,1046958-1047047,
1047241-1047399,1047475-1047596,1048145-1048217,
1048307-1048375
Length = 771
Score = 53.2 bits (122), Expect = 3e-07
Identities = 31/118 (26%), Positives = 58/118 (49%)
Frame = -1
Query: 624 QAPLRKALAPYFQLTQAVRLGNLQRFGEVLENYGPQFRNDHTFTLILRLRQNVIKTAIRS 445
Q L+ Y L+ GN E ++ +F++D+ L+ ++ ++ K I+
Sbjct: 593 QRNLKNHAQVYVDLSTCYSKGNYSELEEYIQLNAEKFQSDNNLGLVKQVLSSMYKRNIQR 652
Query: 444 IGLSYSRISPKDIARKLGLDSAEDAEFIVAKAIRDGVIEATLDPVKGYMSNKESSDIY 271
+ +Y +S +DIA + L + ++AE V + I DG I AT++ G +S E + Y
Sbjct: 653 LTQTYLTLSLEDIASSVQLKTPKEAEMHVLRMIEDGEIHATINQKDGMVSFHEDPEQY 710
>03_03_0227 -
15596445-15596522,15596635-15596767,15596861-15596913,
15597825-15597875,15597999-15598068,15598402-15598586,
15598727-15598780,15599060-15599581
Length = 381
Score = 33.9 bits (74), Expect = 0.18
Identities = 21/78 (26%), Positives = 39/78 (50%), Gaps = 1/78 (1%)
Frame = -1
Query: 540 VLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEFI 361
V E+YG ++ +L +R +K + + L S ISP+D A G ++A +
Sbjct: 129 VAESYGGKYAATLGVSLARAIRAGGLKLTLAGVALGDSWISPEDFAESTGGEAAHRIGAV 188
Query: 360 VAKA-IRDGVIEATLDPV 310
A A + + +++ +DPV
Sbjct: 189 EAGADVYNFLLDTGMDPV 206
>03_02_0984 +
12947444-12947530,12949071-12949127,12949833-12949904,
12950050-12950112,12950955-12951131,12951503-12951628,
12951711-12951777,12952019-12952215,12952617-12952691,
12954524-12954554,12954714-12954802,12955120-12955188,
12955306-12955425,12955963-12956081,12956303-12956441,
12956538-12957038,12957293-12957592,12957694-12957875,
12958277-12958388,12958953-12959072
Length = 900
Score = 28.3 bits (60), Expect = 9.0
Identities = 18/49 (36%), Positives = 32/49 (65%), Gaps = 4/49 (8%)
Frame = -2
Query: 188 DIHQNH-TEKNWKVLRNAV-KENSKIWNLPKKWQ--RKMMMVSHELSYK 54
++ Q H +++ W++LRNAV K ++I++L K+ Q RK + + E S K
Sbjct: 651 NVDQFHVSDRPWEILRNAVSKTYNRIFDLRKEIQTLRKGLQAAKEASEK 699
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,021,136
Number of Sequences: 37544
Number of extensions: 427350
Number of successful extensions: 978
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 972
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2600672280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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