Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c17
         (915 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A...   466   e-133
AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.     26   1.8  
AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulf...    23   9.8  
AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulf...    23   9.8  
AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reduct...    23   9.8  

>AF042732-3|AAC18058.1|  496|Anopheles gambiae diphenol oxidase-A2
            protein.
          Length = 496

 Score =  466 bits (1148), Expect = e-133
 Identities = 230/277 (83%), Positives = 241/277 (87%)
 Frame = -1

Query: 903  NYLHYSLYDQADKLVSKSVFPENASNNEWARFLYYLGRIKAARLEYSDAHKHLVQALRKA 724
            NYLHYSLYDQADKLV+KSVFPE ASNNE ARFLYYLGRIKAA+LEYS AHK LVQALRKA
Sbjct: 220  NYLHYSLYDQADKLVNKSVFPETASNNECARFLYYLGRIKAAKLEYSVAHKQLVQALRKA 279

Query: 723  PQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALAPYFQLTQAVRLGNLQRFG 544
            PQ AAVGFRQTVQKL IVVELLLGDIPER +FRQA LR++L PYFQLTQAVR+GNLQRFG
Sbjct: 280  PQQAAVGFRQTVQKLVIVVELLLGDIPERKVFRQAALRRSLGPYFQLTQAVRMGNLQRFG 339

Query: 543  EVLENYGPQFRNDHTFTLILRLRQNVIKTAIRSIGLSYSRISPKDIARKLGLDSAEDAEF 364
            EVL N+G QFR DHTFTLI+RLR NVIKTAIRSIGL+YSRISP+DIARKLGLDS EDAEF
Sbjct: 340  EVLVNFGEQFRQDHTFTLIIRLRHNVIKTAIRSIGLAYSRISPQDIARKLGLDSPEDAEF 399

Query: 363  IVAKAIRDGVIEATLDPVKGYMSNKESSDIYCTREPQLAFHQRISFCLDLHNQSVKAMRY 184
            IVAKAIRDGVIEATLDP KGYM  KES+DIY TREPQLAFHQRISFCLDLHNQSVKAMRY
Sbjct: 400  IVAKAIRDGVIEATLDPEKGYMRTKESTDIYSTREPQLAFHQRISFCLDLHNQSVKAMRY 459

Query: 183  PPKSYGKXXXXXXXXXXXXXXXXXXAKEMAEEDDDGF 73
            PPKSYGK                  AKEMAEEDDDGF
Sbjct: 460  PPKSYGKELESAEERREREQQDLELAKEMAEEDDDGF 496


>AY462096-1|AAS21248.1|  603|Anopheles gambiae transposase protein.
          Length = 603

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 17/87 (19%), Positives = 43/87 (49%)
 Frame = -1

Query: 777 RLEYSDAHKHLVQALRKAPQTAAVGFRQTVQKLAIVVELLLGDIPERVIFRQAPLRKALA 598
           +L+   +++ +++++   P+   +GF+  V+K   + E ++ ++         PL+K   
Sbjct: 433 KLKIYRSNEQILKSMILDPRIKQLGFQDDVEKFKNICESIISEL--------LPLQKPAV 484

Query: 597 PYFQLTQAVRLGNLQRFGEVLENYGPQ 517
              ++ + V       FG++L+N G Q
Sbjct: 485 EVEKVVKKVSKDVDMLFGDLLKNKGAQ 511


>AJ549085-1|CAD70159.1|  529|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 529

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 69  MGNHHHLPLPFLWQVPDLAVLFH 137
           +G   H   P+ WQ+PD A + H
Sbjct: 101 LGEAIHDSQPYGWQLPDPAAIRH 123


>AJ549084-1|CAD70158.1|  505|Anopheles gambiae thioredoxin-disulfide
           reductase protein.
          Length = 505

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 69  MGNHHHLPLPFLWQVPDLAVLFH 137
           +G   H   P+ WQ+PD A + H
Sbjct: 77  LGEAIHDSQPYGWQLPDPAAIRH 99


>AJ459821-1|CAD30858.1|  502|Anopheles gambiae thioredoxin reductase
           protein.
          Length = 502

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 69  MGNHHHLPLPFLWQVPDLAVLFH 137
           +G   H   P+ WQ+PD A + H
Sbjct: 74  LGEAIHDSQPYGWQLPDPAAIRH 96


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 899,115
Number of Sequences: 2352
Number of extensions: 16698
Number of successful extensions: 27
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 99228240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)