Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c15
         (104 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter Trk2|Sch...    24   3.1  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    23   4.0  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    23   7.1  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    22   9.3  

>SPAC1639.02c |trk2|SPAC1F5.12|potassium ion transporter
           Trk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 880

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 19  ETQNKRLTNI*KNNNERNARSVRGFVAD 102
           +T+N    NI  NNN+ N    + F+ D
Sbjct: 724 DTENDDDNNINNNNNDNNTPKRKNFLMD 751


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = +2

Query: 2   IINKLTRHKTND*QIYEKTIMRETRDQYEALW 97
           I+ KL+  K ND  I+   I  +  D    LW
Sbjct: 538 ILVKLSTPKNNDVFIFSSKITNKLNDDQSKLW 569


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 91  SLVLIARFSHYCFFIYLLVVCFVSR*F 11
           S+  I +F HYC F+    VCF ++ F
Sbjct: 132 SMRCIRKFDHYCSFVG-KDVCFSNQKF 157


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 101 SATKPRTDRAFLSLLFFHIFVSRLFCVSL 15
           S T+ R +R FLS+ +F     R+F + L
Sbjct: 477 SDTQTRLNRLFLSIKYFSEKAMRVFILLL 505


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 378,839
Number of Sequences: 5004
Number of extensions: 3178
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 2,362,478
effective HSP length: 16
effective length of database: 2,282,414
effective search space used: 41083452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)