Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c15
         (104 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical pr...    25   9.4  
U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical ...    25   9.4  

>Z81046-5|CAB02823.1|  225|Caenorhabditis elegans Hypothetical
           protein C37E2.2a protein.
          Length = 225

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -2

Query: 103 SPPQSLVLIARFSHYCFFIYLLVVCFV 23
           +PP+++  +  FS    F+Y +++C+V
Sbjct: 135 TPPKTIASLI-FSAALVFVYFMIICYV 160


>U58750-3|AAB00643.2|  350|Caenorhabditis elegans Hypothetical
           protein F55G1.6 protein.
          Length = 350

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 74  AFLSLLFFHIFVSRLFCV 21
           + LS+ FF I VS +FCV
Sbjct: 228 SLLSVFFFVIIVSTMFCV 245


>AF125462-1|AAD12858.2|  244|Caenorhabditis elegans Hypothetical
           protein Y66H1A.4 protein.
          Length = 244

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -2

Query: 100 PPQSLVLIARFSHYC 56
           PP+ +VL+  FSH C
Sbjct: 56  PPEEVVLVGVFSHQC 70


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,082,067
Number of Sequences: 27780
Number of extensions: 17187
Number of successful extensions: 61
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 12,740,198
effective HSP length: 16
effective length of database: 12,295,718
effective search space used: 221322924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)