Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c15
         (104 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   1.4  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    19   4.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    19   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    19   7.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 16  NETQNKRLTNI*KNNNERN 72
           N+  NK+  N  KNNN+ +
Sbjct: 433 NQKNNKKNANNQKNNNQND 451


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 19.4 bits (38), Expect = 4.3
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%)
 Frame = -1

Query: 89  PRTDRAFLSLLFFHIFVS---RL-FCVSLIC 9
           PR    +L L+ + +F +   RL FCV L C
Sbjct: 129 PRDGLGWLLLMLYLLFATLPLRLSFCVVLAC 159


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 49  IYLLVVCFVS 20
           +++ +VCFVS
Sbjct: 417 LFIAIVCFVS 426


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 18.6 bits (36), Expect = 7.4
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -2

Query: 49  IYLLVVCFVS 20
           +++ +VCFVS
Sbjct: 470 LFIAIVCFVS 479


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,582
Number of Sequences: 438
Number of extensions: 229
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 15
effective length of database: 139,773
effective search space used:  2655687
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)