Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c14
         (863 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive pep...    23   4.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   9.4  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   9.4  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   9.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   9.4  

>EF222291-1|ABN79651.1|  374|Tribolium castaneum cardioactive
           peptide receptor 1 protein.
          Length = 374

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 10/37 (27%), Positives = 19/37 (51%)
 Frame = +3

Query: 555 TVCLTCTLARILSCWSLC*RTLLKNLQVFSNICNTRR 665
           ++  TC    I++ WS   +  +KN +  +   N+RR
Sbjct: 199 SIIATCYAIIIITIWSKNAKGFIKNTKAVNGSDNSRR 235


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/29 (27%), Positives = 13/29 (44%)
 Frame = -3

Query: 783 IKTEQTDAPATSGDDNNNRKVVDANEDEY 697
           ++  Q +A     D NNN    + N  +Y
Sbjct: 447 VEVVQEEAKKEESDSNNNNNKEEGNSCQY 475


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 678 VLSRPPCTRPRSHRPLFDY 734
           V+ +PP   P SH  L+DY
Sbjct: 260 VIRQPPAKDPNSH--LYDY 276


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 678 VLSRPPCTRPRSHRPLFDY 734
           V+ +PP   P SH  L+DY
Sbjct: 260 VIRQPPAKDPNSH--LYDY 276


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +3

Query: 294 CTCPLYNSA*YTRRRNRICNPISC 365
           CTCPL  S    +  +  C   SC
Sbjct: 9   CTCPLGFSGINCQTNDEDCTETSC 32


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,597
Number of Sequences: 336
Number of extensions: 4117
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23789590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)