Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c13
         (202 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    22   0.71 
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    21   1.2  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    20   2.2  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    20   2.9  
AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    19   3.8  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    19   5.0  
DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory pro...    19   6.6  
DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory pro...    19   6.6  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   6.6  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    19   6.6  
AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esteras...    18   8.8  
AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esteras...    18   8.8  
AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esteras...    18   8.8  
AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esteras...    18   8.8  

>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.8 bits (44), Expect = 0.71
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -2

Query: 93  ERSIKNYGTFWPSRGAETQDSKTLQQ 16
           ER +KNY      RGA T D+  L++
Sbjct: 35  ERLLKNYFNCIMDRGACTPDADELKR 60


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -2

Query: 75  YGTFWPSRGAETQDSKTL 22
           YG  WP   + T+ S TL
Sbjct: 68  YGALWPQPTSVTKISSTL 85


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 20.2 bits (40), Expect = 2.2
 Identities = 15/64 (23%), Positives = 27/64 (42%)
 Frame = -2

Query: 192 ATHILSNIEHHEADYPAVCRGRVCHTRYGQKIIERSIKNYGTFWPSRGAETQDSKTLQQT 13
           A H+LS +  H+ +   V    +  TR+  K I   ++N    W  +    +D K  +  
Sbjct: 174 ACHMLSFLMVHQGETQFVAANVILKTRF--KTINNILEN---LWAKKLIVVKDKKKSRSD 228

Query: 12  RRQI 1
            + I
Sbjct: 229 EQTI 232


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 19.8 bits (39), Expect = 2.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = +1

Query: 34  ILCFSPSGWPK 66
           +LC  P+ WPK
Sbjct: 70  MLCSEPAIWPK 80


>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 19.4 bits (38), Expect = 3.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +3

Query: 120 DKRGHDKQQDNQLHGVLYS 176
           +K   DK+ D  +HG + S
Sbjct: 171 EKDEEDKRDDTDMHGRIKS 189


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 19.0 bits (37), Expect = 5.0
 Identities = 5/7 (71%), Positives = 7/7 (100%)
 Frame = +2

Query: 170 IFDNIWV 190
           IFDN+W+
Sbjct: 152 IFDNVWL 158


>DQ855503-1|ABH88190.1|  124|Tribolium castaneum chemosensory
           protein 17 protein.
          Length = 124

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 120 HTRYGQKIIERSIKNYGTFW 61
           H    +K+I   IKN  ++W
Sbjct: 78  HKEGVRKVIRHLIKNKPSWW 97


>DQ855501-1|ABH88188.1|  146|Tribolium castaneum chemosensory
           protein 15 protein.
          Length = 146

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 11/40 (27%), Positives = 19/40 (47%)
 Frame = -3

Query: 125 FVTLAMGRKSLRDPLKTTAHFGHPEGLKHKIRRPYNKHED 6
           F  L + R +    L+T  +  H   L+H  +  +N HE+
Sbjct: 85  FQHLMIHRPNWWHELETKFNPHHEIKLQHLHQSKFNPHEE 124


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 6/19 (31%), Positives = 9/19 (47%)
 Frame = +2

Query: 17  CCKVFESCVSAPRDGQNVP 73
           CC +  +  S     +NVP
Sbjct: 728 CCAICVNATSLVESNRNVP 746


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 18.6 bits (36), Expect = 6.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = -1

Query: 124 LSHSLWAENH 95
           L+HSL A NH
Sbjct: 218 LTHSLAASNH 227


>AJ850297-1|CAH64517.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 18.2 bits (35), Expect = 8.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 156 LHGVLYSTIYGSLF 197
           +HG  + T YGS +
Sbjct: 118 IHGGAFMTGYGSFY 131


>AJ850295-1|CAH64515.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 18.2 bits (35), Expect = 8.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 156 LHGVLYSTIYGSLF 197
           +HG  + T YGS +
Sbjct: 118 IHGGAFMTGYGSFY 131


>AJ850293-1|CAH64513.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 18.2 bits (35), Expect = 8.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 156 LHGVLYSTIYGSLF 197
           +HG  + T YGS +
Sbjct: 118 IHGGAFMTGYGSFY 131


>AJ850292-1|CAH64512.1|  539|Tribolium castaneum putative esterase
           protein.
          Length = 539

 Score = 18.2 bits (35), Expect = 8.8
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +3

Query: 156 LHGVLYSTIYGSLF 197
           +HG  + T YGS +
Sbjct: 118 IHGGAFMTGYGSFY 131


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,131
Number of Sequences: 336
Number of extensions: 1113
Number of successful extensions: 14
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 44
effective length of database: 107,801
effective search space used:  2371622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)