Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c13
         (202 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             26   0.19 
AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase...    21   5.3  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            21   7.0  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            21   7.0  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    20   9.3  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 102 KIIERSIKNYGTFWPSRGAETQDSKTLQQTRRQ 4
           ++ ERS      +WPSRG E   + T+  T  Q
Sbjct: 775 RLEERSRIKCTMYWPSRGTEVYGAMTVTITETQ 807


>AY280613-1|AAQ21366.1|  257|Anopheles gambiae carbonic anhydrase
           alternate isoform protein.
          Length = 257

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/26 (34%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = -3

Query: 116 LAMGRKS--LRDPLKTTAHFGHPEGL 45
           +A+ ++S  +RD ++   +FGH +GL
Sbjct: 13  IALNQRSTVIRDGIQPLDYFGHWDGL 38


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 108  HSECDKRGHDKQQDNQ 155
            HS+ DK+ HD +Q  Q
Sbjct: 3195 HSQIDKQFHDLKQTVQ 3210


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 20.6 bits (41), Expect = 7.0
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 108  HSECDKRGHDKQQDNQ 155
            HS+ DK+ HD +Q  Q
Sbjct: 3198 HSQIDKQFHDLKQTVQ 3213


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +1

Query: 91  LNDFLPIASVTNAATT 138
           LND    A+VT  ATT
Sbjct: 546 LNDLQQAAAVTTGATT 561


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 239,247
Number of Sequences: 2352
Number of extensions: 3705
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 563,979
effective HSP length: 44
effective length of database: 460,491
effective search space used: 10130802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)