Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c12
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase |...    27   2.5  
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c...    27   3.3  
SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.8  

>SPBC119.03 |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 266

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = +3

Query: 99  LMGLQRHPSLLIESLSSLTFPDEAGKRL 182
           L  ++ HP L+++ +   T+PD +G R+
Sbjct: 27  LDAIRGHPELVLKEIDEFTYPDGSGVRM 54


>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 320

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -3

Query: 596 DTGVVCYLIPSKHIAFNCIRLCFVTKYL 513
           DTG  C +  ++ +  NC+R+C+  K L
Sbjct: 69  DTGWGCMIRSTQTLLANCLRICYPEKQL 96


>SPBC29A3.21 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 100

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 90  NIQKNYENRSIVETSCVF 37
           N++ NY N +I+ TSC+F
Sbjct: 65  NLKHNYVNLNIIFTSCIF 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,069,106
Number of Sequences: 5004
Number of extensions: 61164
Number of successful extensions: 137
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)