Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c12
         (841 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defe...    34   0.11 
U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defe...    34   0.11 
AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-ty...    34   0.11 
Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z82269-1|CAB05205.2|  651|Caenorhabditis elegans Hypothetical pr...    28   7.2  

>U61951-3|AAB03158.4| 1783|Caenorhabditis elegans Egg laying defective
            protein 19,isoform a protein.
          Length = 1783

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 148  HSLFPMKLVRDSKSSASLPYKKKALVESTTLLPWQPMSRGPSHQI 282
            HSLF   + R S + +  P + + + + +TLLP+QP S  P+H +
Sbjct: 1582 HSLFNNLVHRLSGAGSKSPTEHERIEKGSTLLPFQPRSFSPTHSL 1626


>U61951-2|AAM75372.1| 1877|Caenorhabditis elegans Egg laying defective
            protein 19,isoform b protein.
          Length = 1877

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 148  HSLFPMKLVRDSKSSASLPYKKKALVESTTLLPWQPMSRGPSHQI 282
            HSLF   + R S + +  P + + + + +TLLP+QP S  P+H +
Sbjct: 1582 HSLFNNLVHRLSGAGSKSPTEHERIEKGSTLLPFQPRSFSPTHSL 1626


>AF023602-1|AAC47755.1| 1783|Caenorhabditis elegans putative L-type
            calcium channelalpha 1 subunit protein.
          Length = 1783

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = +1

Query: 148  HSLFPMKLVRDSKSSASLPYKKKALVESTTLLPWQPMSRGPSHQI 282
            HSLF   + R S + +  P + + + + +TLLP+QP S  P+H +
Sbjct: 1582 HSLFNNLVHRLSGAGSKSPTEHERIEKGSTLLPFQPRSFSPTHSL 1626


>Z81556-2|CAB04525.2|  445|Caenorhabditis elegans Hypothetical
           protein F58G1.2 protein.
          Length = 445

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = -1

Query: 211 FCMED*LMTLSLLPASSGKVSELRDSISKEGCRCK 107
           FC  D    L+++PASS  + E+R+++ K   RCK
Sbjct: 85  FCAPD----LNMVPASSLSIDEIRNAVRKSMFRCK 115


>Z82269-1|CAB05205.2|  651|Caenorhabditis elegans Hypothetical
           protein F52G2.3 protein.
          Length = 651

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -2

Query: 96  IRNIQKNYENRSIVETSCVFILFV 25
           I N+ +NY NR + E  C F  FV
Sbjct: 446 ILNVAQNYYNRKVAENICCFCRFV 469


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,628,647
Number of Sequences: 27780
Number of extensions: 330416
Number of successful extensions: 653
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 652
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2077023564
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)