Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c10
         (199 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P41675 Cluster: Uncharacterized 7.2 kDa protein in HE65...    68   5e-11
UniRef50_Q4SRM6 Cluster: Chromosome undetermined SCAF14516, whol...    33   1.6  
UniRef50_A4IJ76 Cluster: IP18315p; n=1; Drosophila melanogaster|...    32   2.8  
UniRef50_Q0UH71 Cluster: Predicted protein; n=1; Phaeosphaeria n...    31   3.7  
UniRef50_Q6C8M5 Cluster: Yarrowia lipolytica chromosome D of str...    31   6.5  
UniRef50_P14381 Cluster: Transposon TX1 uncharacterized 149 kDa ...    31   6.5  
UniRef50_A5IZT2 Cluster: Hel-1; n=6; Granulovirus|Rep: Hel-1 - S...    30   8.6  
UniRef50_Q9S9U0 Cluster: T32N4.8 protein; n=14; Magnoliophyta|Re...    30   8.6  
UniRef50_A7R403 Cluster: Chromosome undetermined scaffold_596, w...    30   8.6  

>UniRef50_P41675 Cluster: Uncharacterized 7.2 kDa protein in
           HE65-PK2 intergenic region precursor; n=4;
           Nucleopolyhedrovirus|Rep: Uncharacterized 7.2 kDa
           protein in HE65-PK2 intergenic region precursor -
           Autographa californica nuclear polyhedrosis virus
           (AcMNPV)
          Length = 62

 Score = 67.7 bits (158), Expect = 5e-11
 Identities = 34/41 (82%), Positives = 36/41 (87%), Gaps = 1/41 (2%)
 Frame = -2

Query: 162 MKLIILLFVVAAFVTLAXGRKSLRDPLK-TPAHFGHPEGLK 43
           MKLIILLFVVAAFVTLA G+KSL+DPL  T AHF HPEGLK
Sbjct: 1   MKLIILLFVVAAFVTLAMGKKSLKDPLTITTAHFDHPEGLK 41



 Score = 36.7 bits (81), Expect = 0.099
 Identities = 14/18 (77%), Positives = 15/18 (83%)
 Frame = -3

Query: 56 PRG*KHXIRRPYNKHEDK 3
          P G KH IRRPYNKHED+
Sbjct: 37 PEGLKHKIRRPYNKHEDR 54


>UniRef50_Q4SRM6 Cluster: Chromosome undetermined SCAF14516, whole
           genome shotgun sequence; n=1; Tetraodon
           nigroviridis|Rep: Chromosome undetermined SCAF14516,
           whole genome shotgun sequence - Tetraodon nigroviridis
           (Green puffer)
          Length = 305

 Score = 32.7 bits (71), Expect = 1.6
 Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 2   ICLRVCCKVFESCAFSPSGWPKCAGVFNGSLNDFLPXA-SVTNAATTNSR 148
           +CL VC     SC    S WP  A    G  + F P A  + + ++ N R
Sbjct: 221 VCLPVCLSACLSCLPEHSDWPATAAFLRGMQSSFAPSAPEILSTSSQNRR 270


>UniRef50_A4IJ76 Cluster: IP18315p; n=1; Drosophila
           melanogaster|Rep: IP18315p - Drosophila melanogaster
           (Fruit fly)
          Length = 492

 Score = 31.9 bits (69), Expect = 2.8
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 5   CLRVCCKVFESCAFSPSGWPKCAGVF 82
           C  +C K    C   P GWP C G++
Sbjct: 415 CCTLCNKPLNKCDNVPCGWPNCRGIY 440


>UniRef50_Q0UH71 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 481

 Score = 31.5 bits (68), Expect = 3.7
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +2

Query: 5   CLRVCCKVFESCAFSPSGWPKC 70
           C+ +CCK  ESCA S  G PKC
Sbjct: 356 CMGICCKPGESCARSSEG-PKC 376


>UniRef50_Q6C8M5 Cluster: Yarrowia lipolytica chromosome D of strain
           CLIB122 of Yarrowia lipolytica; n=1; Yarrowia
           lipolytica|Rep: Yarrowia lipolytica chromosome D of
           strain CLIB122 of Yarrowia lipolytica - Yarrowia
           lipolytica (Candida lipolytica)
          Length = 454

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +2

Query: 23  KVFESCAFSPSGWPKCAGVFNGSLNDFLPXASVTNAATT-NSRIISF 160
           ++FE+ A     W    G F+G L++  P   +  A  T NSR+ S+
Sbjct: 235 QLFENMALLQDAWESRHGEFSGDLSEMTPEQQIEEAGVTCNSRLNSW 281


>UniRef50_P14381 Cluster: Transposon TX1 uncharacterized 149 kDa
           protein; n=1; Xenopus laevis|Rep: Transposon TX1
           uncharacterized 149 kDa protein - Xenopus laevis
           (African clawed frog)
          Length = 1308

 Score = 30.7 bits (66), Expect = 6.5
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +2

Query: 17  CCKVFESCAFSPSGWPKCAGVFNGSLN-DFLPXASVTNAATTNSRIISFMVFYI 175
           C +V+ + + +   W K +G+  GSL  DFLP A      +  S+II ++  Y+
Sbjct: 714 CQEVYAAASSARINWSKSSGLLEGSLKVDFLPPA--FRDISWESKIIKYLGVYL 765


>UniRef50_A5IZT2 Cluster: Hel-1; n=6; Granulovirus|Rep: Hel-1 -
           Spodoptera litura granulovirus
          Length = 1162

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 17  CCKVFESCAFSPSGWPKCAGVFNGSLNDFLP 109
           C KVF++  F P  W      FN ++  F+P
Sbjct: 51  CLKVFDTVHFKPHRWCHVGNYFNTTIKPFMP 81


>UniRef50_Q9S9U0 Cluster: T32N4.8 protein; n=14; Magnoliophyta|Rep:
            T32N4.8 protein - Arabidopsis thaliana (Mouse-ear cress)
          Length = 1768

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 129  AFVTLAXGRKSLRDPLKTPAHFGHPE 52
            +FVTL  G++ L +PLK   H+GHP+
Sbjct: 1222 SFVTL--GQRVLANPLKVRMHYGHPD 1245


>UniRef50_A7R403 Cluster: Chromosome undetermined scaffold_596, whole
            genome shotgun sequence; n=1; Vitis vinifera|Rep:
            Chromosome undetermined scaffold_596, whole genome
            shotgun sequence - Vitis vinifera (Grape)
          Length = 1891

 Score = 30.3 bits (65), Expect = 8.6
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = -2

Query: 129  AFVTLAXGRKSLRDPLKTPAHFGHPE 52
            +FVTL  G++ L +PLK   H+GHP+
Sbjct: 1222 SFVTL--GQRVLANPLKVRMHYGHPD 1245


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,951,150
Number of Sequences: 1657284
Number of extensions: 2856984
Number of successful extensions: 7225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7224
length of database: 575,637,011
effective HSP length: 45
effective length of database: 501,059,231
effective search space used: 10021184620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)