Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c10
         (199 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    25   1.8  
SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    23   4.2  
SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|c...    22   9.7  
SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster...    22   9.7  

>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 93  RDPLKTPAHFGHPEG 49
           R PL +PAH  +PEG
Sbjct: 564 RGPLPSPAHIMYPEG 578


>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1369

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/40 (30%), Positives = 18/40 (45%)
 Frame = -1

Query: 199 EKATHILXNIEHHEADYPAVCRGRVCHTRXGQKIIERSIK 80
           EK+ H +  IE+        C G     R G  ++ER I+
Sbjct: 818 EKSEHFIY-IENQFFVTSTTCEGTTIENRVGDALVERIIR 856


>SPBC19C7.11 |||ClC chloride channel |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 812

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -2

Query: 168 NTMKLIILLFVVAAFVTLAXGRK 100
           NT+ L+I  F    FVT + G K
Sbjct: 464 NTILLLIATFARTIFVTFSYGAK 486


>SPAC2H10.01 |||transcription factor, zf-fungal binuclear cluster
          type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 480

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/22 (40%), Positives = 10/22 (45%)
 Frame = +2

Query: 5  CLRVCCKVFESCAFSPSGWPKC 70
          CL  C K    C FS + W  C
Sbjct: 36 CL-ACQKAHADCHFSTTSWRAC 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 807,232
Number of Sequences: 5004
Number of extensions: 12232
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 45
effective length of database: 2,137,298
effective search space used: 42745960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)