Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= rbmnc17c10
(199 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0746 - 31636024-31641396 30 0.22
11_04_0359 + 16735204-16735676,16736597-16736647,16736860-167369... 28 0.91
09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683 28 1.2
08_02_0478 + 17621678-17623768 27 2.8
07_01_1019 + 8714171-8714190,8714239-8714371,8714781-8714945,871... 27 2.8
04_03_0860 + 20377577-20377948,20378440-20378505,20379411-203794... 27 2.8
07_03_0161 - 14560287-14560426,14560467-14560707 25 6.4
09_06_0038 - 20415363-20415883,20415917-20416596,20416858-204169... 25 8.5
07_03_0695 + 20753281-20753802 25 8.5
01_05_0147 + 18597194-18597643,18598347-18598681,18600073-186001... 25 8.5
>01_06_0746 - 31636024-31641396
Length = 1790
Score = 30.3 bits (65), Expect = 0.22
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = -2
Query: 129 AFVTLAXGRKSLRDPLKTPAHFGHPE 52
+FVTL G++ L +PLK H+GHP+
Sbjct: 1240 SFVTL--GQRVLANPLKVRMHYGHPD 1263
>11_04_0359 +
16735204-16735676,16736597-16736647,16736860-16736934,
16737011-16737062,16737147-16737280,16737397-16737511,
16737665-16737751,16737855-16737903,16738351-16738435,
16738641-16738715,16738848-16739029,16739905-16739969
Length = 480
Score = 28.3 bits (60), Expect = 0.91
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 29 FESCAFSPSGWPKCAGVFNGSLNDFLPXASVTNAAT 136
++ C+ SG KC FNG + DF P + N T
Sbjct: 414 YDLCSLRISGASKCKQNFNGEIIDFSPNSHRWNEET 449
>09_04_0581 - 18684273-18685814,18686156-18686200,18686393-18686683
Length = 625
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 29 FESCAFSPSGWPKCAGVFNGSLNDFLPXASVTN 127
FE+C F +G P+C GS F ++ N
Sbjct: 470 FENCTFQKNGSPRCLDPKQGSQESFASFVALRN 502
>08_02_0478 + 17621678-17623768
Length = 696
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +1
Query: 103 SAXSECDKRGHDKQQDNQLHG-VLYSTIYG 189
S S C + GHD Q +HG V+ S + G
Sbjct: 301 SIISSCSEHGHDDHQGRVIHGLVIKSALEG 330
>07_01_1019 +
8714171-8714190,8714239-8714371,8714781-8714945,
8715810-8715890,8716223-8716318
Length = 164
Score = 26.6 bits (56), Expect = 2.8
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = +3
Query: 123 QTRPRQTAG*SASWCSIFXNIWVAF 197
Q R R TA + SWCS+ W+ +
Sbjct: 129 QMRNRLTAMNTRSWCSVLAGYWIDY 153
>04_03_0860 +
20377577-20377948,20378440-20378505,20379411-20379492,
20380142-20380362
Length = 246
Score = 26.6 bits (56), Expect = 2.8
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -1
Query: 190 THILXNIEHHEADYPAVCRGRVCHTRXGQKIIERSIKNS 74
T+IL E D P CR C T G K++E + S
Sbjct: 78 TYILDAAEEAGVDLPYSCRAGACSTCAG-KVVEGGVDQS 115
>07_03_0161 - 14560287-14560426,14560467-14560707
Length = 126
Score = 25.4 bits (53), Expect = 6.4
Identities = 7/13 (53%), Positives = 9/13 (69%)
Frame = +2
Query: 50 PSGWPKCAGVFNG 88
P+GWP+C G G
Sbjct: 26 PAGWPRCCGAAGG 38
>09_06_0038 -
20415363-20415883,20415917-20416596,20416858-20416911,
20417440-20417489,20417665-20417800,20419030-20419128,
20419411-20419676
Length = 601
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 124 CHTRXGQKII-ERSIKNSGTFWPSRGAESTXFEDL 23
C+ G K+I E + + SG + + G+ES FED+
Sbjct: 218 CYKGNGLKVINENNEECSGIEFSAEGSESPCFEDV 252
>07_03_0695 + 20753281-20753802
Length = 173
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = +1
Query: 136 DKQQDNQLHGVLYSTIYGSLF 198
D++ NQ G+ Y TI+GS++
Sbjct: 49 DERNPNQKIGIHYGTIFGSVY 69
>01_05_0147 +
18597194-18597643,18598347-18598681,18600073-18600147,
18600325-18600427,18601554-18601642,18602953-18603064,
18604093-18604146,18604271-18604319,18606236-18606347,
18606389-18606436,18607000-18607327
Length = 584
Score = 25.0 bits (52), Expect = 8.5
Identities = 12/34 (35%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Frame = +2
Query: 38 CAFSPSGWPKCAGVFNGSLND--FLPXASVTNAA 133
C + P GWP C G + D FL N A
Sbjct: 451 CLWVPFGWPCCTLFMGGEMGDRAFLSYLEAYNKA 484
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,248,872
Number of Sequences: 37544
Number of extensions: 79811
Number of successful extensions: 185
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 14,793,348
effective HSP length: 45
effective length of database: 13,103,868
effective search space used: 262077360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -