Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= rbmnc17c10
         (199 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.             23   1.8  
AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein ...    21   5.3  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    20   9.3  

>X85217-1|CAA59483.1| 1231|Anopheles gambiae Anlar protein.
          Length = 1231

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -1

Query: 103 KIIERSIKNSGTFWPSRGAE 44
           ++ ERS      +WPSRG E
Sbjct: 775 RLEERSRIKCTMYWPSRGTE 794


>AY957503-1|AAY41942.1|  596|Anopheles gambiae vasa-like protein
           protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 5.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 27  SSNXVLSAPRDGQNVPEFLMD 89
           +S+ V    + GQ+VP+FL D
Sbjct: 536 ASDLVKILTQAGQSVPDFLKD 556


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 20.2 bits (40), Expect = 9.3
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = +2

Query: 92  LNDFLPXASVTNAATT 139
           LND    A+VT  ATT
Sbjct: 546 LNDLQQAAAVTTGATT 561


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,586
Number of Sequences: 2352
Number of extensions: 3213
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 563,979
effective HSP length: 43
effective length of database: 462,843
effective search space used: 10182546
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)